KEGG   Solanum tuberosum (potato): 102601551
Entry
102601551         CDS       T02981                                 
Name
(RefSeq) WD repeat-containing protein 82-B
  KO
K14962  COMPASS component SWD2
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102601551
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sot03019]
    102601551
   03036 Chromosome and associated proteins [BR:sot03036]
    102601551
Messenger RNA biogenesis [BR:sot03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     102601551
Chromosome and associated proteins [BR:sot03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     102601551
    COMPASS/SET1 complex (yeast)
     102601551
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_IFT122_1st WD40 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_Gbeta EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_Aladin Beta-prop_Nup120_160 WD40_RFWD3 Beta-prop_NOL10_N TRM82_WD Beta-prop_ACSF4 WDR90_beta-prop_4th Beta-prop_VPS8 PAC11 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st NBCH_WD40 EMC1_C MIOS_WD40 WD_LRWD1 DUF2963 Tricorn_2nd
Other DBs
NCBI-GeneID: 102601551
NCBI-ProteinID: XP_006341315
LinkDB
Position
Un
AA seq 334 aa
MMALSELTDDIVGSMAVGATFSDFGGQINSLDFHRTEDLLITASEDDSIRLFDIANGKLL
KTTYHKKHGADRICFTHHPHSVICSSIHNLDVHGESLRYLSMYDNRCLRYFKGHKERVVS
LCMSPVNDSFLSGSLDHSVRIWDLRVNACQGILRLRGRPAVAYDQQGLVFAVAMEGGAIK
LFDSRHFDKGPFETFLVGGDTAEVCDIKFSNDGKSMLLTTTSNSIYVLDAYAGEKRCGFN
LDPSPTAMEATFTPDGQYVFSGSGDGSLHAWHIDTQKKICSWDSHIGVASCLKWAPRRVM
FVAASSVLTFWIPDHRGPGEAAGVQVEEQVTLTQ
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgatggcactgtcggagctcaccgatgacattgttgggagcatggccgttggagccact
ttctcagattttggtgggcagataaactcacttgattttcatcggacagaagatttactg
ataaccgctagtgaggatgactcaattcgactttttgacattgccaatgggaagttgctg
aagactacatatcataagaagcatggagctgatcgaatatgctttacccaccaccctcat
tctgttatatgctcttcaatacacaacttggatgtgcatggagagtctttgcggtaccta
tccatgtacgataatcgatgtcttcgttactttaagggacataaagagagggttgtatca
ctgtgcatgtctccggttaatgacagctttttgtctggatctcttgaccatagtgtgaga
atatgggatcttcgcgtaaatgcatgccaggggattttgcgtctaagaggtaggcctgca
gttgcttatgaccaacaaggcctcgtctttgcagtggcaatggaagggggtgccatcaaa
ttgtttgattcaagacattttgacaaggggccctttgaaaccttcctagtgggtggagat
acagctgaggtttgtgacataaaattcagcaatgatggaaaatcaatgcttttaacaact
actagtaatagcatctatgtgcttgacgcctatgcaggagagaagcggtgtgggtttaat
ctggatccttccccaacagcaatggaggcaacctttacaccagacggccagtatgttttt
tcaggttcaggagatggaagcttgcatgcgtggcacatcgacacgcaaaaaaagatttgt
agctgggatagccacataggtgtggcatcgtgcttgaaatgggcgccaagaagagtcatg
tttgttgctgcatcatcagttcttaccttttggattcctgatcatagaggtcctggtgaa
gccgctggagtccaagtagaagaacaagttactcttactcaatga

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