Solanum tuberosum (potato): 102602227
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Entry
102602227 CDS
T02981
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
sot
Solanum tuberosum (potato)
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sot03041
]
102602227
03009 Ribosome biogenesis [BR:
sot03009
]
102602227
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102602227
Spliceosome [BR:
sot03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102602227
Ribosome biogenesis [BR:
sot03009
]
Eukaryotic type
Pre-60S particles
Helicases
102602227
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
ARTD15_N
Motif
Other DBs
NCBI-GeneID:
102602227
NCBI-ProteinID:
XP_006342065
UniProt:
A0ABQ7V831
M1ALL5
LinkDB
All DBs
Position
Un
AA seq
745 aa
AA seq
DB search
MATDFSFEQPSDEEVEYEENDDSEEEEHEVDEDNEDADPKPRTNKKPQSPWDFSSYSESV
ADEHSHRRTTSIDFKISKARQQLSAPIAKPIEEDSDSDDSEPHRQEEYRPDDEDGDDDVD
THVAEKKPFFASSEGVTFHANSFIELHISRPLLRACEALGYSKPTPIQAACIPLALTGRD
ICGSAITGSGKTAAFALPTLERLLYRPKNRPAIRVLILTPTRELAVQVHSMIGKLAQFMP
DIRCCLVVGGLSTKVQEAALRTMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL
LELGFSAEIRELVRLCPKRRQTMLFSATMTEEVDDLINLSLNKPLRLSADPSTKRPATLT
EEVVRIRRMREGNHEAVLLALCTKTFTSKVIVFSGTKLAAHRLKIIFGLLGFKAAELHGN
LTQAQRLDALELFRRQEVDFLIATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTAR
AGREGYAVTFVSDNDRSLLKAIVKRAGSRLKSRIVAEQSITKWAQVIEQLEDQVSAVMQE
EREEMALRKAEMEANKAENMIAHRDEIYSRPKRTWFVTEKEKKLVQKAAKENAAAKENGS
ESKVMSAEHAEDLKMKEKRKREREKNLPRKKRRKLEAAREQLEDEDDLDDVKDKTKKEKS
GISLVDLAYRRAKAVKAVNKAVDAGKIVRKAGNKPKPKSRASESRTEEMQDLFQNDMSER
KQRKPLHAGGKKKSSFKSKSRYKRR
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgatttctcgttcgaacaacccagcgatgaagaagttgagtatgaggagaat
gatgacagtgaagaagaagaacatgaagtggatgaagataatgaagatgccgaccccaaa
cctcgaacgaataagaagccgcaatctccatgggacttctcttcttactctgaatccgtt
gctgatgaacacagccaccgtagaacaacttcaattgatttcaaaatatcaaaagctcgt
caacaactctctgctcctatagctaaaccaatcgaggaagattccgattccgacgattca
gaacctcaccgccaggaagagtacagacccgatgatgaggatggtgacgatgatgtagat
acgcatgttgctgaaaagaagccattttttgcctcatcagaaggagttacatttcatgca
aattcgtttattgagctccatatctcaaggccgttgcttcgggcttgtgaagcattgggt
tacagtaagcctaccccaattcaggcggcctgcattccattggctttaaccggtcgagat
atatgtggtagtgctataacaggatctggaaagacagctgcttttgccttaccaacactg
gagagactgttgtaccgtccaaaaaataggcctgcaattagagttcttattcttactcca
acaagagagttggctgttcaggttcatagtatgataggtaaacttgcccaatttatgcca
gatatcagatgttgtctggttgttggtggtctgtcaaccaaggtgcaagaggcagccttg
agaacaatgcctgatattgtcgtggccactccaggacgtatgatagatcatctacgaaac
tccatgtcagttgatttggatgatcttgcagtattgattcttgatgaggccgatcgtcta
ctggagctgggtttcagtgctgaaattcgtgagctggttagattgtgtccaaagcggaga
cagaccatgttgttttctgcgacaatgactgaggaagttgatgatctcatcaatctctca
ctgaataaacctttgcgcctgtcagctgatccatctacgaaacggcctgcaacattgact
gaagaggtagttagaatacggcgcatgcgtgaaggaaatcatgaagctgttctccttgca
ttgtgcaccaagaccttcacttccaaagtgattgttttcagtggtacaaagctagcagct
catcggttgaaaattatatttggtttacttggtttcaaagcagctgagctacatggaaat
cttacgcaagcgcagcgtctagatgctttggaacttttcagaagacaggaagtggatttt
ttgattgcaaccgatgttgcagctcgtggacttgacattattggtgttcaaactgttata
aattttgcgtgcccacgtgatcttactagttacgttcatcgagtgggtcggacagctaga
gctggtagagaaggttatgccgttacctttgtctcagataatgataggtctcttctaaaa
gccattgttaaacgagctggttcaaggctaaagagtcgaattgtagcagagcaatctata
actaagtgggcacaagtgattgaacagcttgaggatcaagtgtctgcagttatgcaagaa
gagagggaagagatggcactaagaaaagctgaaatggaagcaaataaggcagagaatatg
attgcccacagggatgagatttattcacgtcctaaaagaacatggtttgtcacagaaaag
gagaaaaagctagttcaaaaggcagcaaaggagaatgcagcagccaaagaaaatggttct
gagagcaaggtaatgagtgccgaacatgcagaagacctgaagatgaaggaaaagaggaag
cgagaacgagagaaaaatctgccgaggaagaaaagaaggaagttggaggctgctcgagag
caattagaagatgaagatgacttagatgatgtcaaagacaaaacaaagaaagagaaatct
ggaatttccctagttgatcttgcttatcgtcgtgcaaaagcagtcaaggctgtgaacaag
gcagttgatgctggcaagattgttagaaaggccggaaataaaccaaaaccgaaaagcaga
gcatctgaatccaggacagaggaaatgcaggatctttttcaaaatgatatgagtgagaga
aaacaaagaaaaccacttcatgccggtggaaagaaaaagtcctcattcaagagcaagtca
cggtacaagaggaggtga
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