Solanum tuberosum (potato): 102602592
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Entry
102602592 CDS
T02981
Name
(RefSeq) ATP-dependent RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102602592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102602592
03012 Translation factors [BR:
sot03012
]
102602592
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102602592
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102602592
Translation factors [BR:
sot03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
102602592
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
R3H
OB_NTP_bind
DEAD
HA2_C
Ank_2
ATPase
HA2_N
nSTAND3
Ank_5
AAA_19
AAA_22
ABC_tran
Rad17
AAA_7
PhoH
AAA_23
AAA_16
Sigma54_activat
NACHT
NPHP3_N
AAA_11
Motif
Other DBs
NCBI-GeneID:
102602592
NCBI-ProteinID:
XP_006366627
LinkDB
All DBs
Position
Un
AA seq
1205 aa
AA seq
DB search
MASTATSSSGVGKKRQKKGQKQQEVTNVAESTQIRVAQVLEQFRASNDEVYTFESNLSNR
DRAAVHMLCRKMGMKSKSSGRGDQRRISIFKTKQNMDTLKGKDVLSCFKFSEEAKYALQD
LFTRYPPGDGETSEQVVGKHSKKFDKLRGKKDDMFCKPAMSTSEIAKRVESFASRIEKTP
NMRQITLQRSKLPIASFKDAITSTIESNQVVLISGETGCGKTTQVPQFILDHMWGKGETC
KIVCTQPRRISATSVSERISAERGESIGDTVGYKIRLESRGGKQSSIMFCTNGILLRVLI
TNGSASFNKEAPGKMGKDPISDITHIIVDEIHERDRYSDFMLAILRDLLPSYPNLHLVLM
SATLDAERFSKYFGGCPVIRVPGFTYPVKTFYLEDVLSIVKSTKNNHLDSTSSSVMPEES
ILTEEYKVALDEAINLAFSDDDLDPLLDLISSEGGPKVFNYQHSLSGVTPLMVFAGKGRV
GDICMLLSFGADYHLRANDGKTALDWAEQENQTEAVEIIKEHMEKSSSSCEEQQHLLDKY
LSTVDPALIDDVLIEQLLKKICIDSEDGAILVFLPGWEDINRTRERLRASHYFNDQSKFS
VIPLHSMVPSVEQKKVFRHPPPGCRKIVLSTNIAETAITIDDVVYVIDSGRMKEKSYDPY
NNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRAASLPDFQIPEIKRIPIEELC
LQVKLLNPDCKIEEFLQKTLDPPVYETIRNAIIVLQDIGALSFDEKLTELGERLGSLPVH
PLTSKMLLISILLNCLDPALTMACASDYRDPFTLPMLPNEKNKAAAAKAELASWYGGRSD
QLAVVAAFEGWKNARETGQESRFCSKYFVSSGTMHMLSGMRKQLASELLRNGFIPGDGSS
CNLNAQDPGILHAVLVAGLYPMVGRLLPPLKNNKKAVIETAGGDKVRLSPHSTNFKLSFQ
KFYEQPLIAYDEITRGDGGLLIRNCTVIGPLPLLLLATEIVVAPGNEEDDDGNDDDESDY
EDADEDNGEEGNIKADLSEAHQGEKIMSSPDNTVKVIVDRWIPFESTALDVAQIYCLRER
LAAAILFKVTHPGKVLPEVLAASINAMGCILSYNGMSGISLLHEPVDSLTTMVSATEIGQ
SDPGWNNRMDMNPNISPNSFEYNGRHQRPNMHHQRGGIHVSKGSSAHRGTMQRGHSKRKR
GNGPY
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacagctacatcatcatctggggttgggaagaagaggcagaagaaaggccaa
aaacaacaagaggttaccaatgttgcagaatccacccagattcgggttgcccaagttctt
gaacagtttcgtgcttctaatgatgaagtgtacacatttgaatcaaacctttcaaatcgc
gatagagctgcagttcatatgttatgccggaaaatgggaatgaaatcaaaaagttctggg
cgtggggatcaacgtcgtatatctattttcaagactaaacagaacatggacacactgaaa
ggaaaggatgtgctaagttgttttaaattttcggaggaggcaaaatatgctctacaggat
ttatttacgcgatatccacctggtgatggggagacaagtgaacaagtagtcgggaaacac
agtaagaaatttgataaattacgaggaaagaaggatgatatgttctgtaagcctgcgatg
agcacgtctgaaattgcaaaaagggttgagtcatttgcgtcaagaatagaaaaaacccca
aacatgagacagattacattacaaaggtctaagcttccaattgcttccttcaaggatgct
attacatcaactatagaatctaatcaggtggtcttgatctctggtgaaactggatgcggg
aaaactacacaggtccctcaatttattttagatcatatgtggggtaaaggcgagacatgt
aaaattgtctgtactcagccacgacgaatttctgccacatcagtttctgagagaatttct
gctgaaagaggcgaaagtattggggatactgttggttacaagatacggctggaaagcaga
ggtgggaagcagtcatcaatcatgttttgtaccaatgggattctactgagggtcctgatt
accaatggaagtgccagcttcaacaaggaggctcctgggaaaatgggcaaggatcccatt
tctgatataacccacatcattgtggacgaaattcatgagagggatcgctactccgatttc
atgctcgctattctcagggacttgcttccttcatatccaaatttgcatttggttctgatg
agtgctacactggatgctgaacgtttttcaaaatactttggtggctgcccagttatccga
gtccctggatttacttatcctgtaaaaacattctatcttgaggatgtactttctattgta
aagtcaactaaaaataatcaccttgattccacctcatccagtgtcatgcctgaggaatca
atattaacagaggagtacaaagttgccttagatgaagcaattaatctggctttttcagat
gatgatctggatccccttttggatctaatatcttctgaagggggaccaaaagttttcaat
tatcagcattctttgagtggagtgacgccattgatggtgtttgctggaaaaggccgcgtt
ggtgacatttgcatgctcctctcttttggtgctgactaccatttacgtgctaatgatggg
aaaactgctctagattgggctgagcaggagaatcagacagaagctgttgaaataattaag
gaacacatggagaaatcatcttccagttgtgaggagcagcaacatttacttgacaaatac
ctatcaacagttgaccctgcactgattgatgatgtccttattgaacaactattaaaaaaa
atatgcatagactcggaggacggggccatccttgttttccttcctggttgggaggacatt
aacagaacacgagagagattgagagcaagccactatttcaatgatcagtctaagttttca
gtgatccctctccattctatggttccttctgtggagcaaaagaaggtttttagacaccct
cctccaggctgccgcaaaatcgttctttcaactaatattgctgaaactgccattaccatt
gatgatgttgtttatgtaatagacagtggacgaatgaaagaaaaaagttatgacccttat
aataatgtttcaactcttcaatcatcatgggtctcaaaagcaagtgcaaagcaaagagaa
gggcgtgctgggcggtgccagccagggatttgttatcatctttattcaaaacttcgagca
gcttcattgcctgatttccagattcctgagattaagaggattcctatagaggaactatgt
cttcaggtcaagcttcttaaccctgattgcaagatagaagaattcctgcagaaaacactt
gaccctccggtttatgagaccatacgtaatgcaatcattgttcttcaagatattggggcg
ctgtcatttgatgagaaacttacagagcttggagaaaggctaggatctttaccagttcat
ccgcttacaagcaagatgcttttaatttccatcttattgaactgccttgacccagcattg
actatggcttgcgcttctgactatagagatccatttaccctacctatgttgccaaatgag
aagaataaagctgcagctgcaaaagctgagttagcctcatggtatggtggaagaagtgat
caattagcagttgtggctgcgtttgagggctggaaaaatgcgagagaaactggtcaagaa
tcgaggttttgttctaagtactttgtatcttcaggcactatgcatatgctatcaggaatg
cgtaaacaacttgcatctgaactattgaggaatgggtttattcccggagatggatcttcc
tgtaaccttaacgcacaggatccaggcatactacatgctgttcttgttgctggtttgtac
cctatggttggaagactgctcccgcctctgaaaaataataagaaggctgtcattgagact
gcaggtggtgataaagttcgattaagccctcattcaactaacttcaagctttcattccaa
aaattctatgagcaaccattaattgcatatgatgagataactcgtggtgatggaggtctg
cttataaggaattgcactgtcattgggccactcccactgttgttgctggcaacagagatt
gtagtggctcctggaaatgaagaagatgatgatggcaatgatgatgatgaaagtgattat
gaagatgctgatgaggacaatggcgaggaaggtaatattaaagcagatctgtcagaagcc
catcaaggagagaaaattatgtcttctcctgataatacagttaaggtcattgttgataga
tggattccttttgagtcaacagctcttgacgttgctcaaatttactgcctaagagagaga
ttagctgcagcaattttattcaaggtcacacatcctggaaaagttcttcctgaggttctt
gcagcctctataaatgcaatgggttgtatcttgtcttacaatgggatgtcaggaatatca
ttgctgcatgagcctgtggactcacttactacaatggttagtgctactgagattggtcaa
tctgatcctgggtggaataacagaatggatatgaatcccaacatttctcccaattcattt
gagtacaatggccggcatcagcgccccaatatgcatcatcaaagaggtggcattcatgta
tcaaagggatcgtctgcgcatagaggtaccatgcaaagaggtcattctaagcggaagcgt
ggaaatggaccttattaa
DBGET
integrated database retrieval system
