Solanum tuberosum (potato): 102603411
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Entry
102603411 CDS
T02981
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03022
Basal transcription factors
sot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
102603411
09124 Replication and repair
03420 Nucleotide excision repair
102603411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sot03021
]
102603411
03400 DNA repair and recombination proteins [BR:
sot03400
]
102603411
Transcription machinery [BR:
sot03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
102603411
DNA repair and recombination proteins [BR:
sot03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
102603411
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GRAM
SHOCT
Motif
Other DBs
NCBI-GeneID:
102603411
NCBI-ProteinID:
XP_006352543
LinkDB
All DBs
Position
Un
AA seq
599 aa
AA seq
DB search
MADGKLVKRAKYKTSVKVPGVPGVLKLTKERFYFMPNDPTLTTKLNVEFKLIKGHKSSKE
CSSKQALLNLTQAQGGNYLFEFDSFPDRDQCRDFVASAIAACGEIGKATSEKPAVPHDEQ
LSATEMGRRIKLLQENSELQKLHRQLVIGGILSEAEFWAARKKLLEQSENKKPKQRVALK
NDMWSVKPLSDGQTNRVTFNLTPEVIHQIFAEKPAVRQAYLKFVPGKMSEKEFWTKYSRA
EYLHSTKNIVAAAAEAAEDEELAVFLKQDDMLVSEARRKIRRVDPTLDMEADEGDDYMHL
PDHGLPQGETKEILEPQYEPFKRSFSQYLNQHAAVVLRGRVIDVELGDTRSVAEAFTRTY
QAEQATEVSDENAYRERVKKVSRVAEIEDLQGPQDPPVALLSIKDPRDYFDSQQANAIKA
LGDAETGIRQLKFSVSKEEAFCSLKDSISEINSQGLIEPIISPEVALKVFNGLSQNISST
KYYLGKNPHESVLDQLPSATKNELLLHWTSIQELLKHFWSSYPITTKYFYAKVTRLKDAM
SQIYPKLQEIKESVQSDVRHQVSLLVQPMLQALDAAFAHYDADIQKRSAKSGERPNGFV
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggccgatggtaagttggttaagcgtgccaagtacaaaacttcagtcaaggttcctggc
gtccctggcgttttgaaattgaccaaggaacggttttattttatgccgaatgacccaaca
ttaacgacaaagcttaatgtggagttcaagttgattaaaggccacaagtcttccaaggag
tgttcaagtaagcaggctctacttaatcttacacaagctcagggtggaaattatcttttt
gaatttgatagcttccctgaccgtgaccagtgtcgggactttgttgcctcagcaattgca
gcttgtggggaaatagggaaagctacttccgaaaaacctgctgttccacatgatgagcaa
cttagtgcaacagaaatggggcgtcggattaagttactgcaggagaacagtgagttgcag
aaacttcacaggcaattggtcattggaggtattctatcagaggctgaattttgggctgct
aggaagaagctgctggaacagagtgaaaataagaagccaaaacagcgggtagctttaaaa
aatgacatgtggagtgtaaaaccattatctgatggccagacgaacagagttacatttaac
ttgactccagaggttattcatcagatatttgcagagaaaccagctgtccgccaagcatat
ttgaagtttgttcctggcaagatgtcagaaaaagaattctggactaaatattcaagagct
gaatacctccacagtacaaaaaacattgttgcagctgctgcggaggctgctgaagatgag
gagcttgcagtttttttgaagcaagatgatatgttagtatctgaagctcggaggaagatc
agaagagtggatccaactctggacatggaagcagatgaaggtgatgattatatgcatctc
ccggatcatgggctacctcagggtgaaactaaggagattctagaaccacagtatgaacca
ttcaaaaggtctttctcgcaatacctcaatcagcatgcagcagtggttcttcgaggaaga
gttatagatgttgagctgggtgacacaagatctgttgctgaagcattcaccaggacatat
caggctgaacaagctactgaagtgtctgatgagaatgcatatagagaacgcgtaaaaaaa
gtttctcgagtagctgagattgaggatcttcagggacctcaagacccaccagttgcattg
ctaagtatcaaggatccccgagactactttgattctcagcaagcaaatgcaataaaggct
ttgggagatgctgaaacagggataagacagttgaaatttagtgtgagcaaagaagaagcc
ttttgctccttgaaggactccatctctgagataaattctcaaggattgattgaaccaata
attagtcccgaagtagctctcaaggttttcaacgggctaagtcagaatatctcaagtaca
aaatattatctgggaaagaatccccatgagagtgtgttagatcagttgcctagtgcaacg
aaaaatgagctattacttcattggacatcaattcaggaattattgaagcacttctggtca
tcttatccaataacgacaaaatatttctacgccaaggtgactaggttaaaggatgcaatg
tctcagatatatcccaagttgcaggagatcaaggaatctgtgcaatcagatgtcagacac
caagtttcccttcttgtacagccaatgcttcaggctttggatgctgcctttgcccattac
gacgcagatatacagaagagatctgccaaaagtggtgagagaccaaatggatttgtttag
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