KEGG   Solanum tuberosum (potato): 102603961
Entry
102603961         CDS       T02981                                 
Name
(RefSeq) THO complex subunit 4A-like
  KO
K12881  THO complex subunit 4
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03013  Nucleocytoplasmic transport
sot03015  mRNA surveillance pathway
sot03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102603961
  09122 Translation
   03013 Nucleocytoplasmic transport
    102603961
   03015 mRNA surveillance pathway
    102603961
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sot03019]
    102603961
   03041 Spliceosome [BR:sot03041]
    102603961
Messenger RNA biogenesis [BR:sot03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     102603961
    TREX complex
     102603961
Spliceosome [BR:sot03041]
 Complex C
  Other components
   EJC/TREX
    102603961
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    102603961
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_5 RRM_3 RRM_10
Other DBs
NCBI-GeneID: 102603961
NCBI-ProteinID: XP_006349515
UniProt: M1BNR7
LinkDB
Position
Un
AA seq 247 aa
MSNLDVSLDDLIKRNKSSTSRNPRPRTAGSGSGSGPGFDSGPGPRRRFPNRASNRPAPYS
VHAPESTWDHDMFAEHAPSSARGPGVSGIETRIKLLISNLDYGVSNEDIKELFSEAGDIK
RYSIHYDKSGRSKGTAEVIFSRRRDAEAAIKRYNNVQLDGKPMKIEFAGTNIAPPALPPI
RNRLYGNPNPAPRSQQRGGGFRRPRGGARGGSMRKDGGRGRGRGENVSAEDLDAELEKYH
AEAMQTN
NT seq 744 nt   +upstreamnt  +downstreamnt
atgtcaaatctggatgtatctctcgatgatttgatcaaaaggaacaaaagttccactagt
cggaaccctagacccagaacagccggatctggatccggatccggtcccggattcgactct
ggtccaggtccaaggcgtcgcttccctaaccgtgcctccaaccggccggcgccatattct
gttcatgcaccggagtctacatgggaccatgatatgtttgcggagcatgccccgtcgtct
gcccggggacctggggtgtccgggattgagaccaggattaagctcctcatttccaatttg
gattatggggtttcaaatgaagatatcaaggagcttttctcagaagctggtgatataaag
cgttactcaattcattatgacaagagtggaagatcaaagggaactgcggaagtaatcttt
tcacgtcgaagggatgcagaggcagccattaagagatacaacaatgttcagctagatggg
aagcccatgaaaattgagtttgctggaacaaatattgctcctccagctcttcctcccatt
agaaatcgtttatatggaaatccaaatcctgctccaagaagtcaacaaagaggtggtgga
tttagacgtcctcgaggtggtgctagaggaggaagcatgagaaaggatggtggaaggggc
agaggtcgtggtgagaacgtttctgcagaagatcttgatgctgaattggagaagtatcat
gcagaagccatgcagacaaactaa

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