Solanum tuberosum (potato): 102604430
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Entry
102604430 CDS
T02981
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 11-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sot
Solanum tuberosum (potato)
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102604430
03041 Spliceosome [BR:
sot03041
]
102604430
03036 Chromosome and associated proteins [BR:
sot03036
]
102604430
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102604430
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102604430
mRNA cycle factors
Common to processing body (P body) and stress granule
102604430
Spliceosome [BR:
sot03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102604430
Chromosome and associated proteins [BR:
sot03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
102604430
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
102604430
NCBI-ProteinID:
XP_006354152
UniProt:
M1D553
LinkDB
All DBs
Position
Un
AA seq
604 aa
AA seq
DB search
MSMSWADSVSAAENPAGAPSKSAYVPPHLRNRPSTDPPAQASYAGAAASLGNDHSGYGVP
NVVGSRWSGQRNEYQSGYAGGGGRGGGWNGKSGGWDRGRDREVNPFTNDDSEPVSELESS
AINFDAYEDIPVETSGDNVPPPVNTFADIDLGEAVNENIRRCKYVRPTPVQRHAIPISLA
GRDLMACAQTGSGKTAAFCFPIISGIMRGQFPRPPRPRMAFPLALILSPTRELSCQIHDE
AKKFSYQTGVRVVVAYGGAPINQQLRELERGVHILVATPGRLVDLLERARVSLQMIRYLA
LDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSTYIFLAV
GRVGSSTDLIVQRVEYVQETDKRSHLMDLLHAQKENGVHGKQSLTLVFVETKKGADALEH
WLCMNGFPATAIHGDRTQQEREHALRSFKTGHTPILVATDVAARGLDIPHVAHVVNFDLP
NDIDDYVHRIGRTGRAGKTGLATAFFNENNSSLARSLSDLMQEANQEVPAWLSRFAARST
YGGKNRRGGARFGARDFRRDSSYNRGASGGATDYYGGGANMNSGYPSGGYNASYGTAGVT
SAWD
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatgtcgtgggctgattctgtttctgcagccgagaatccggctggtgctccgtct
aagtcagcatatgttccaccacatctgcgaaacagaccttcaactgatcctcctgcacag
gcttcgtatgctggggctgctgcatcattaggtaatgaccatagtggttacggtgtccca
aatgtggttgggagtcgttggagtggtcaaaggaatgaataccaatctggttatgctggt
ggaggaggacgtggtggtggttggaatggcaaaagtggtggttgggatcgtgggagggat
cgggaagttaacccctttacaaacgatgatagtgaacccgttagtgaactagagagttct
gcgatcaattttgatgcatatgaggatattccagtggaaacaagcggggataatgtgccc
cctcctgtgaatacttttgcagatattgatttaggtgaagctgtcaatgaaaatataagg
aggtgcaagtatgttaggccaacccctgtgcaacggcatgctatacctatttcacttgcg
gggagggatttgatggcttgtgctcagactggttctggaaaaactgctgctttctgcttc
cccatcatcagtgggatcatgaggggccaatttcctagacctccacgtccacgcatggca
tttcctctagctcttattctctccccaacgagggagctctcttgccaaattcatgatgag
gctaaaaaattttcatatcaaactggggtcagggtggttgttgcttatggtggtgctcct
ataaaccaacagcttcgagaattagagagaggtgtgcatattcttgtagcaacccctgga
cggttggtagatttacttgagagagcaagagtctcgttgcagatgataaggtatttggct
ctagacgaggctgaccggatgcttgacatgggttttgaacctcaaataaggaaaatagtg
caacagatggacatgcctccgccaggtgtgcgacagaccatgcttttcagtgccactttt
ccaaaagagattcagagactggcctcagattttctatccacttatatctttttggccgtc
ggaagggtcggctctagcacagatttgattgtccaaagagttgaatatgttcaagagact
gacaagagaagtcacttgatggatcttcttcatgcgcagaaggaaaacggtgttcatggc
aagcaatctcttacccttgttttcgtggagacgaagaagggagctgatgcactggagcat
tggctttgtatgaatggtttccctgctactgctattcatggtgatagaactcagcaggag
agagagcatgccctcagatccttcaaaactggtcacacaccaatcttggttgcaacagat
gtggcagcacgtggtctcgatatcccccatgttgcacatgttgttaactttgatcttcca
aatgacattgacgactatgtgcaccgtattggaagaactggacgagcaggaaaaacaggt
ttagctactgccttcttcaatgagaacaattcttcactggcaagatcactatccgactta
atgcaagaagcaaaccaagaagtacctgcttggctctctcgctttgctgctcgatccact
tatggaggcaagaatcgtcgtggtggagctcgttttggtgctcgtgactttcgaagagat
tcctcttacaatcgaggtgctagtggtggtgctacagactattatggtggtggtgccaat
atgaacagtggctatccatctggggggtataatgcatcgtatggaacagcaggcgtgact
agtgcatgggactaa
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