Solanum tuberosum (potato): 102605069
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Entry
102605069 CDS
T02981
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot04120
Ubiquitin mediated proteolysis
sot04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
102605069
04120 Ubiquitin mediated proteolysis
102605069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sot04121
]
102605069
Enzymes [BR:
sot01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102605069
Ubiquitin system [BR:
sot04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
102605069
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_5
zf-RING_11
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
102605069
NCBI-ProteinID:
XP_006347566
LinkDB
All DBs
Position
Un
AA seq
530 aa
AA seq
DB search
MMRLQTYAGLSLIATLAVIYHAFNCRGQFYPTMVYLSTSKISLVLLLNMGLVVMCILWQI
TKKIFLGPLREAEVERLNEQSWRELMEILFAITIFRQDFSVTFLAMVTALLLIKGLHWLA
QKRVEYIETTPTVTRLSHIRIVSFLGFLLFIDSLFLYDSMNYLIQTRQASVSLFFAFEYM
ILATTTVSTFVKYVFYVSDMLMEGQWENKPVYTFYLELIRDLLHLSLYLCFFMVIFMNYG
VPLHLIRELYETFRNFKSRVADYVRYRKITSNMNDRFPDATPEELNASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPTENGTNVAGSRPDVQQGRGSSAASA
SQGSQANTTPSNNVSQHQARIQAAAAAAAVYEKSYVYPSVPTLAWSPGYAPVPPSYSPVG
SSANVLSDGERALNEQLLHNQLANMPFAQYPQSGFFPFQYPGANNLGIPKAQLEAHKILL
QQQIEVLQTQLKLLEHPNTHKKADDLGISDSKGKSILSESSRGQTEGAEI
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggttacaaacttatgcggggcttagcttaatagctacactggctgttatttat
catgcttttaattgcagaggacaattctacccaacaatggtttatctgtcgacgtccaag
atcagtcttgtgcttcttctcaatatgggtcttgttgtcatgtgcattttgtggcagatt
acaaagaaaatttttcttggtccccttcgagaggctgaggtggagaggctgaacgagcag
tcttggcgggaactcatggaaatactttttgctatcacaattttccggcaggacttctct
gtgacctttcttgcaatggtaactgcgctcttgcttatcaagggtttgcactggttggct
caaaagagagttgagtacattgaaacaactcctactgttactagattgtcccacattcgc
atagtatccttcctgggctttctcctcttcatagacagtctctttttgtacgactccatg
aactatttgatacagacaagacaggcatctgtttctctcttctttgcctttgagtacatg
atacttgcaacaacaactgtctcaacttttgtaaaatatgtcttctacgtaagtgacatg
cttatggaaggacaatgggagaataagcctgtctatactttctacttagaacttatccga
gacttgctccacttgtctctttacttgtgcttcttcatggtgattttcatgaactatggt
gtgcccctgcatttgattcgggagctttatgagacattccgcaacttcaagagtcgagtt
gccgattatgtacgctatcggaagatcacttcaaatatgaatgaccgttttccagatgct
acacccgaagagctcaatgcaagtgatgctacctgcatcatttgtcgtgaggagatgacc
actgctaagaaacttatttgcgggcatctgtttcatgtgcattgcctccgctcatggcta
gagcgtcaacacacctgtcctacctgcagagcccttgttgtgccaactgaaaatgggaca
aatgtggcaggatcacgaccagatgtgcaacaaggccgtggatcaagtgccgcaagtgca
tctcagggttcgcaagcaaacaccacgccaagtaataatgttagccagcaccaagctaga
atccaagctgcagcagcagcggcagcagtttatgagaagtcttatgtttatccttctgta
ccaacactagcgtggtctcctggatatgctccagttcctccttcctatagtccagtgggc
agttctgccaatgtgctctcagatggggaacgggcattgaatgaacaattattgcacaat
caattagcaaatatgccctttgctcaatatccacaatctggttttttcccttttcaatat
ccaggtgctaacaaccttggtattccaaaggctcaacttgaggcccataagatactttta
cagcaacaaattgaggttctgcaaacccagctcaagcttttagagcatccaaacacacac
aaaaaagcagatgatttaggaatttctgatagtaagggaaaatcaattttgtcagagagt
tctcgaggacaaaccgaaggtgcagaaatatga
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