Solanum tuberosum (potato): 102605528
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Entry
102605528 CDS
T02981
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102605528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102605528
03041 Spliceosome [BR:
sot03041
]
102605528
03009 Ribosome biogenesis [BR:
sot03009
]
102605528
03016 Transfer RNA biogenesis [BR:
sot03016
]
102605528
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102605528
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102605528
Spliceosome [BR:
sot03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102605528
Complex C
U4/U6.U5 tri-SnRNP related factors
102605528
Ribosome biogenesis [BR:
sot03009
]
Eukaryotic type
Pre-60S particles
Helicases
102605528
Transfer RNA biogenesis [BR:
sot03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102605528
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Zot
Motif
Other DBs
NCBI-GeneID:
102605528
NCBI-ProteinID:
XP_006349284
UniProt:
M1BUV6
LinkDB
All DBs
Position
Un
AA seq
992 aa
AA seq
DB search
MGSFKRKSQEFSNEGDIPPSKQLKQNDLLGVDEPVTCLHDVSYPEGYVPSASTSGLPQQD
SKPAKEFPFPLDPFQSEAIKCINNGESVMVSAHTSAGKTVVALYAIALSLKNNQRVVYTS
PIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAWV
IFDEVHYMRDRERGVVWEESIVMAPKNSNFVFLSATVPNAKEFADWVAKVHQQPCHIVYT
DYRPTPLQHYIFPSGGDGLYLVVDDKGKFREDSFQKALNALVPANEGDKKRESSKWQKGL
VVGKSGEDSDIFKMVKMIIQRQYDPVICFSFSKRECEFLAMQMAKMDLNNDDEKVNIETI
FWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDDRGICILMVDEKL
EPSTAKFMLKGSADALNSAFHLSYNMLLNQIRSEDGHPENLLRNSFYQFQADRALPDLEK
QAKILEEERNSIVIEEEDSLERYYNLLEQYKSLKRDVRGIVFSPKYCLPFLQPGRLVCIE
CTKVDVDVPTFSINEEVTWGVIVNFERVKGISEDDANKKPEDANYTVDVLTRCIVQKDEV
GRKTIKVVRLKDAGEPAVVSLPLSQIDSLSSVRLVIPKDLLPSEVRENTLKKVSEVLNRF
LKEGMPLLHPEDDMKVQSSSYRKASSRIEALESLFEEYEIAKSPLIKEKLKVLHKKKELT
SKIKSIKKTLRTSTVLAFKDELKARKRALRRLGYIRDDVVLQKGKVASEISSADELTLTE
LMLNGTFRNIKVEDMVSLLSCFVWQEKLQDAQKPQEELGLLFAQLQDTARQVAKVQLESK
VQIDVENFVSSFRPDIMEAVYAWAKGSKFYEIMEMTPVFEGSLIRAIRRLEEVLQQLIQA
AKSIGDIVLEAKFEEAVTKIKRDIVFAASLYL
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgggttcttttaagaggaagtcgcaagaattctccaatgagggtgatattcctccaagt
aaacagctgaaacaaaatgatttacttggtgtggatgagccagtgacatgtctgcatgat
gtgtcatatccagaagggtatgttccctctgcttcaacttctggtttgcctcaacaagat
tcaaaacctgctaaagagttcccttttccactcgacccttttcaatctgaagcaatcaaa
tgtattaataatggcgaatccgtcatggtatcagcacacacgtcagcgggaaagacagtt
gtggcattatatgcaattgccttgtcgttgaagaataaccagcgagtagtatatacttca
ccaattaaggctcttagtaatcagaagtatagagaattcaaagaggagttttcagatgtg
ggtttgatgactggagatgtcacaattgatccaaatgcttcttgcctggtaatgactaca
gaaatctggcgtagtatgcagtacaaaggatcagaggttacaagggaggtggcttgggtt
atttttgatgaggtacactacatgcgtgatagagaaagaggtgtggtttgggaggaaagc
attgttatggccccaaaaaattccaactttgtcttcctctcagccacggtgcccaatgct
aaagagtttgcggattgggttgcaaaggtccatcagcaaccatgtcacattgtttatacg
gactatagacccacaccacttcagcattatatatttccttctggtggtgatgggttatac
ttggtggttgatgataaagggaagtttcgcgaggatagttttcagaaagctttgaatgct
cttgttccagccaatgaaggggataaaaaaagagaaagtagcaagtggcagaagggtctg
gttgttggcaaatctggtgaggatagtgacatattcaagatggttaaaatgattatccag
cggcaatatgatcctgtaatatgcttcagcttcagcaaaagagagtgtgaatttctagca
atgcagatggctaaaatggatttaaacaatgatgatgagaaggtgaatattgaaactatt
ttctggagtgccatggacatgttgtcggatgatgataaaaagctgcctcaggtttcaaat
atgctacccctattgaaacgtggaattggtgtgcatcattctggtttgcttcctatattg
aaagaagtgattgaaatcctgttccaagaaggattcatcaagtgtttgtttgccacagag
actttcagtatagggttgaacatgcctgcaaaaactgttgtcttcacaaatgttcgtaaa
tttgatggagacaagtttaggtggttatccagtggtgagtatattcagatgagtggtcgt
gctggccgtcgggggattgatgatcgtgggatctgcatccttatggttgatgagaaactt
gaaccttctacagctaaattcatgctaaaaggaagtgctgatgcattaaacagtgccttc
catttaagctataacatgcttttaaatcaaatacgatctgaagatggtcatcctgaaaat
ctgctgcgtaactcattttatcaatttcaagcagatcgtgcacttcctgatcttgagaaa
caagcaaagattcttgaagaggagagaaactcaattgtgattgaagaagaagacagcctt
gagagatattataatctgctagaacaatataagagcttgaagagggatgtacgtggcatt
gttttttctccaaaatattgcttacctttcctgcagcctggtaggcttgtatgcattgag
tgtacaaaggttgatgttgatgttccaaccttctccatcaatgaagaggtcacatgggga
gtaatagttaattttgaaagggtgaaagggatttctgaagatgatgcaaacaaaaaaccg
gaggacgcgaactatacagtagatgtactcacgagatgtatagtgcagaaggatgaggtg
ggtagaaagacaattaaagtcgttcggttgaaagatgctggggaaccagctgttgtctct
cttcctttgtcccagattgatagtttgagcagtgtccgtcttgtgataccaaaggatctt
ttgccttcagaagttcgagaaaatacactaaagaaggtttctgaagttctcaatagattt
ttaaaagagggcatgcctcttttacacccagaagatgacatgaaggttcaaagtagctcg
tacaggaaggcttcgagtaggatagaggcactggagagtctgtttgaagagtatgagata
gcgaagtctccccttataaaagagaagcttaaggttttgcataagaagaaagaacttact
agcaaaatcaaatcaatcaagaaaacattgcgtacttcaactgtcttagctttcaaagat
gaacttaaagcaaggaaaagagctcttagaagacttggatacatcagggatgacgttgtg
ttgcagaaagggaaggtagccagcgaaatcagcagtgcagatgagttgaccttgactgaa
ttgatgttgaatgggaccttcagaaatattaaagtggaggatatggtttctcttctctct
tgttttgtttggcaagaaaagcttcaggatgctcaaaagccccaggaagagcttgggttg
ctctttgcacaattacaggatacagctcggcaagtggcaaaagttcagctcgagagcaag
gttcaaatagatgttgagaacttcgtgagttctttccgacctgatatcatggaggccgtc
tatgcctgggctaaaggatctaagttttatgagattatggaaatgactccggtgtttgaa
ggcagtttaatcagggctatcaggagattggaggaagttcttcagcagctaatacaagct
gctaaatccattggggatatcgtgcttgaggcaaaatttgaagaggctgttaccaagatc
aagagggatattgtctttgctgcatctctatatttgtag
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