Solanum tuberosum (potato): 102606375
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Entry
102606375 CDS
T02981
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102606375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sot03021
]
102606375
03041 Spliceosome [BR:
sot03041
]
102606375
03036 Chromosome and associated proteins [BR:
sot03036
]
102606375
Transcription machinery [BR:
sot03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
102606375
Spliceosome [BR:
sot03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102606375
Complex B
102606375
Complex C
U2 SnRNP specific factors
102606375
Chromosome and associated proteins [BR:
sot03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
102606375
TFTC complex
102606375
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
102606375
NCBI-ProteinID:
XP_006361388
UniProt:
M1CYM7
LinkDB
All DBs
Position
Un
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQQPTGVICAINGNFSGGKVQEIVVARGKVLDLLRPDDNGKLQTLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNCFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTITFSICGVDCGFDNPI
FAAIELDYSEADQDPTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRVDLPAERGVLIVSAAMHKQKTMFFFLLQ
TEYGDIFKVTLDHDNDRVKELKIKYFDTIPVTSSLCVLKSGFLFASSEFGNHALYQFQAI
GDDPDVEASSSTLMETEEGFQPVFFQPRKLKNLVRIDQIESLMPIMDMKIVNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLSVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSLQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMNGGQLSDARSRFLGLRAPKLFSIVVRGRRAMLCLSSRPWLGYIH
QGQFLLTPLSYESLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RRFVLQPKKKMVIMIESDQGAYTAEEREAAKKECFEAAGNGENGSAEQMENGEDEDGSDP
LSDEQYGYPKSESGRWVSCIRVLDPRTTQTTCLLELQDNEAAFSICTVNFHDKEHGALLA
VGTAKGLQFWPKKSFEAAYIHIYKFKEDGKVLELLHKTQVDGVPLALCQFQGRLLAGIGS
VLRLYDLGKKRLLRKCENKLFPNSITAIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHVDFDTVAGADKFGNIYFVRLSQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKLEEIVQFHVGDVVSCLQKASLIPGGGECIIYGTVMGSVGAMLPFTSRDDVDFFSHLE
MHLRQEFPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtctcactctccagcaacccaccggcgtaatctgtgctatcaacggc
aacttttccggcggaaaagtacaagaaatcgtcgtcgctcgtggaaaagtccttgacctc
ctacgtcccgatgataatggtaagcttcaaactctattatctgttgaaattttcggggct
atacgttccttagcacaatttcggttaaccggtgctcaaaaggattacattgtagttggg
tcggattcaggtaggatagtgatattggagtataataaagagaagaactgttttgataaa
gtacatcaggagacttttggtaaatcgggttgtaggaggatagttccaggtcagtatttg
gctattgacccgaaaggtagggctgtgatgattggcgcttgtgagaagcagaagcttgtg
tatgttttgaatagggatactgcagctaggttaacaatttcgtcacctttagaagctcat
aagagccatacgattacgttttcgatatgtggggttgactgtggatttgataacccgata
tttgctgctattgaattggattattcggaggcagatcaggatccgacaggccaagctgca
aatgaggctcaaaagcatttgacattttatgaattagatttaggacttaatcatgtttcg
aggaagtggtctgaacaagtcgataatggtgctaatttacttgttactgttcctggaggt
ggggatggtccaagtggtgtgcttgtttgtgcggagaattttgtgatatataagaatcag
ggacaccctgatgttagggctgttattcccaggagggtagatttaccagcagaacgtgga
gttttgattgtttcggctgctatgcataagcagaagacaatgtttttctttcttttgcaa
actgaatatggagatatctttaaggtgacattggaccacgacaatgacagggttaaggag
ttaaagatcaagtattttgatacaattccggtcacttcttctctgtgtgtgttgaagtca
gggttcctctttgcttcgtcagagtttgggaatcatgcgttgtatcagtttcaggctata
ggagatgatccagatgttgaagcttcatcatcgacgttgatggaaactgaagaaggcttt
caacctgtatttttccagccaagaaagctaaagaatcttgttaggattgatcagattgag
agcttgatgccaatcatggacatgaaaatcgtaaatctttttgaggaagaaactccacaa
atattttcactttgtgggaggggtcctcggtcttcgttgcgcatacttaggccaggttta
gctgttagtgaaatggctgtgtcacaacttcctggtgttccaagtgctgtctggactgtg
aaaaagaatgttaatgatgagtttgatgcctacattgttgtctcttttgcaaatgcaact
cttgtactttctattggtgagacagttgaagaagttagtgacagtgggtttcttgatact
actccatctctttctgtttcattgattggtgatgattcgttaatgcaagttcatcctagt
ggtataaggcatattagagaagatggccgtattaatgaatggagaactcctggaaagaga
actattgtcaaggttggatctaatagacttcaagtggtaattgcactaagtggaggggag
cttatatattttgaagttgatatgactggccagttgatggaagttgagaagcatgagatg
tcaggtgatgtagcttgtctggacattgcccctgttcctgagggaagacaaaggtcccgt
ttccttgcagttggatcatatgataacactatccgtatcttgtcgttggaccctgatgac
tgtatgcaggttctgagcctgcaaagtgtatcttcaccgccagagtctctcctttttcta
gaagttcaggcctctgttggtggagaggatggtgcagatcaccctgccagcctttttctt
aatgctggtttacaaaatggagttttattcaggactgtggtggatatgaatggtgggcag
ctttcagatgcacgttcacgtttcttggggcttagagcccctaagctcttctccattgtt
gtgagaggacggcgtgctatgctctgcctatcaagtagaccatggctaggttacatacac
caagggcaatttcttttgacacctttatcatatgagagtcttgaatttgcagcctcgttt
tcatccgatcaatgtgcagaaggtgttgtagcggttgcaggggatgcgttgagggtcttc
acaatagagagattgggcgagactttcaatgaaacagctatacccttaaggtatacacca
agaaggtttgttcttcaacccaaaaagaagatggtgataatgattgagagtgaccaggga
gcatatactgcagaagagcgtgaagctgccaaaaaagagtgctttgaggcagctgggaat
ggtgaaaatggaagtgcagaacaaatggagaatggtgaagatgaggatggtagtgatcca
ctatctgatgaacaatatggttatcctaagtcggagtcaggaagatgggtttcctgcatc
agagtccttgatccaaggacaacacagaccacttgtctgctagagcttcaggataatgag
gctgcatttagcatatgcactgttaatttccatgacaaggagcatggagctctgttggct
gttggtactgccaagggcctccagttttggcccaaaaaatcgtttgaagcagcatacatt
catatatacaaatttaaagaggatgggaaggtcctagagcttttgcataagacacaggta
gatggtgtgcctcttgcactatgtcagttccaaggtagactgctggctggtattgggtct
gtccttaggttgtatgatttggggaagaaacggctgctccgaaaatgtgagaacaagcta
ttccccaactcgatcacagctatccacacctatcgtgatcggatttatgttggtgacatg
caagagtcattccactactgtaagtataggcgtgatgaaaatcaactgtacatatttgct
gatgacacggtcccgagatggctaactgcagcacagcatgtagattttgacactgtggca
ggagctgataagtttgggaatatctactttgtgcgattatctcaggacgtttcagatgag
attgaagaagatcctactggtggaaaaataaaatgggagcaggggaagctgaatggagcc
ccaaataagcttgaggaaatagtacaatttcatgttggtgatgtggtctcttgcttgcaa
aaggcatcacttattccaggagggggcgaatgtataatctacgggactgtgatggggagt
gttggggcaatgcttccatttacctcgagggatgatgttgacttcttctctcatttggag
atgcatttgaggcaggagttcccaccgttgtgtggcagggatcacatggcctacagatct
gcctacttccctgttaaggatgtaatagatggagacttgtgtgaacaattcccaaccttg
cccatggatatgcagcgcaaaattgcagatgagttggataggacgccaggcgaaattctg
aaaaagcttgaagaaataagaaacaaaattatttga
DBGET
integrated database retrieval system
