Solanum tuberosum (potato): 107058202
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Entry
107058202 CDS
T02981
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107058202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
107058202
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107058202
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
107058202
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
RRP4_S1
RRP40_S1
CHASE5
Motif
Other DBs
NCBI-GeneID:
107058202
NCBI-ProteinID:
XP_015159108
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All DBs
Position
Un
AA seq
200 aa
AA seq
DB search
MTMAMEAETQELVTPGQVLGKASQLKAGKGAYVSTENGTVYASLTGFRSLIPPPSDSVDQ
RSTVEVTGHKAHGAVPQPGSIVFARVTKVMARTASADIVCVDSKSVREKFTGIIRQQDVR
ATEIDKVDMHLSFRPGDIIRALVLSLGDARAYYLSTAKNELGVVSAESVAGGTMVPISWT
EMQCPLTGQVEPRKVAKVEA
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgacgatggctatggaagctgaaacccaagagttggtcacgccaggacaagtattaggt
aaagcatcacagttgaaagccggaaagggggcttacgtttcaactgagaatggcaccgtt
tacgcctccctcaccgggttccgttctcttatacctccgccttccgattctgttgatcag
agatcaacagtcgaagttactggtcataaagcccatggagcagttcctcagcctggttcc
attgtttttgctagagttactaaggtgatggctagaacggcttcggcagacatagtgtgt
gttgattccaaatctgtgcgtgagaaattcactggcattattaggcaacaagatgtcaga
gcaactgagattgacaaagttgacatgcatttgtccttccgaccgggtgatattattcgt
gcattggtgctatcacttggagatgcacgagcatattatctgtcaactgcgaagaatgag
ctgggtgttgtatctgctgaaagtgtggctggtggtaccatggttccaattagttggaca
gaaatgcagtgccctctaactggtcaagtagaaccgcgaaaggtggccaaagttgaagct
tga
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integrated database retrieval system