Solanum tuberosum (potato): 107059690
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Entry
107059690 CDS
T02981
Name
(RefSeq) cell differentiation protein RCD1 homolog
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107059690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
107059690
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107059690
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rcd1
V-ATPase_H_N
Motif
Other DBs
NCBI-GeneID:
107059690
NCBI-ProteinID:
XP_015161965
LinkDB
All DBs
Position
Un
AA seq
336 aa
AA seq
DB search
MDFATVDHDVDVPIVEVEKQKGSEENVAKHHSRAAYLIMDLHYSSNREEVLIQLDNFIKQ
PRSESMRINLGYYLWKSFNTVNRSESMRIGLGYHLWNLFDTVYILLQEVAAVYQKFLDST
LTLKESARVCNALTVFQCMASHPDARKWLVKEKVQDYLYPFLQITPNVMLPLQLLRLSIF
NFIDALTKFDELHGHEILLLFLDTQIFSSCVNCIRDGDKPIKKAATLILMKILMQEEGLR
YCCSRPDDFLSVIRILCQLVRSFSYQIPCSQHLKYVVQCFLSLLRVAWEDRVYETVRDML
PLQLIENTFRNIIHKDPEIPEMLHQLVWNLNHRPPQ
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggattttgcaactgttgatcatgatgttgatgtacctattgtggaggtggaaaaacaa
aagggttctgaagaaaatgttgcaaagcatcatagcagggcggcgtacttgataatggat
cttcattacagtagtaatcgtgaagaagttcttattcaactcgacaatttcatcaaacag
ccgagaagtgaatcaatgcgcatcaatcttggatattacctgtggaaatccttcaataca
gtcaacagaagtgaatcaatgcgcatcggtcttggatatcacttgtggaacttgtttgat
acagtttacatacttttacaggaagtagcagcagtgtaccaaaagttcttagactcaaca
ttaaccctcaaggaatctgctcgagtttgtaatgcccttactgtatttcagtgtatggcc
tctcacccagatgcaagaaagtggctcgtcaaagaaaaagtacaagattatctttaccca
ttcctccaaattactccaaatgtgatgttgcctctgcaacttctgaggcttagcatcttc
aattttattgacgcccttacaaagtttgatgagttacatgggcatgaaattcttctttta
tttctagacacacaaatattttcttcctgtgtgaactgcattcgtgatggtgataaaccg
ataaagaaggctgcaacactcatacttatgaaaatcttgatgcaagaggaagggttaaga
tattgttgttctcgccccgatgattttctgtcagtgatacgaatcttgtgtcaacttgta
cgatcattttcttatcaaatcccttgttcacagcacctaaaatatgttgttcaatgcttc
ctaagtcttttgcgggtagcttgggaagacagggtatatgaaacagtgagagacatgctt
cctctacagctaattgaaaacacttttcgcaatattattcataaagatccagagattcca
gaaatgctgcatcagttagtgtggaatcttaatcatcgaccacctcaataa
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