Solanum tuberosum (potato): 107060232
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Entry
107060232 CDS
T02981
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107060232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sot03400
]
107060232
DNA repair and recombination proteins [BR:
sot03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107060232
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_11
Motif
Other DBs
NCBI-GeneID:
107060232
NCBI-ProteinID:
XP_015163317
LinkDB
All DBs
Position
Un
AA seq
1084 aa
AA seq
DB search
MDSGDGSGPKQRRTRQQFLKYCVDFIEKRNRSCQNGNLTPSSSTCSVNIGKEGVSCGRKR
KMAVSEGDKRKMGKWSEDARKLRKGKKKVDNGRRCKFSPGTCESIMERIFVEEIPDDDDT
DDSEDDSDDVVIIEEEEGVNTESGSGWWSNTGLKSNMLNAKDQEVVSSTSSMCGRTPGKS
EEVDTDSTSCSESESDSEASSDEDNDDPEDKNYRLIESSSSSQYDDVISDFDDTESEDEK
NEEGEKESNEGLVPELVAESEKQKKGGANVLRARSLSKSKKKKLNNGNDSSSPILLTDEE
EFDEVGSDGEESKSEEECEVDDSVKNVVQKDVVRKDRRTGKKILEDSEFMKFVVDSIINV
DDHDKLTPFEEKEQVPVKETLPLVFRFEDEDEPPPPEKEEWEKEVENLFAEMQMCILESD
IGFTNPSVSPMQSGDLSNCQMGNHQLVLDEQIGLVCKVCSYVHLEIKYIFPSFAQRTRGR
YERKHLGQSPSLLDVGGFRFSDSSAVQDSMINEEGTVWDLVPPSAKSTMYPHQRGGFEFM
WKNVAGDINLERLRQPLSDSKGGCIISHPPGTGKTRLTIVFLQSYLKLFPKSRPVIIAPS
SLLLNWEAEFQKWEVDIPFHNLNSKDFSLQEDEATVSVFRCLSHAGKRNPHLIRMVKLGS
WVKGKSVLGISYDLFRILTGDDGDGYAKPIREILLKYPGLLVLEEGHTARNEQSLVWKAL
KKVETEKRIVLSGTPFQNNIKELYNTLCVVSPKFAADLEQKWASLSSSIDKNARALEELR
DIISPLVHKCSENVKKVSLPGIRDTVIHLKPTDLQKELLRRIPENPSSFYEQNLVSLISV
HPSLVAKRKEFSDLESQLTERGCRLDPDTGVKMKFVVELIRLCGGRKERVIIFSQLLDPL
NLIKEQLNSLFGWTLGREILYMDGKLDVKQRQISINSLNDPKSDVKVLLASIKACSEGIS
LIGASRVVLLDVLWNPSVEQQAISRAYRNGQTKFVHVYCPVTSKWEVDKIEQQTRKKYHS
DVLLSRDHEAKMDPSCSVSEDNILDSMVEHEGLRHIFEKLSHAPRVVPPTTCLDSSNQPP
KPSS
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atggattcaggggatggctctggtccaaaacagaggagaactagacaacagtttttgaaa
tattgtgttgattttattgagaaaagaaacaggtcctgtcaaaatggtaatcttactcca
tcttcttcgacttgttccgtgaatattggaaaagagggtgtgagttgtgggagaaaaaga
aaaatggcagtctcagaaggtgataagaggaaaatgggaaaatggtcagaagatgcaaga
aagttaagaaaagggaagaaaaaagtggataatgggaggaggtgcaagttcagtccagga
acttgtgagtctatcatggaacggattttcgtcgaggaaatacctgatgatgatgatacg
gatgattcggaggatgattctgatgatgttgttatcattgaagaagaggagggtgtaaat
actgaatcaggttcaggatggtggtcgaatacgggcttaaagagtaatatgttgaatgca
aaagatcaggaggttgtttcatctacctcaagcatgtgtggtaggacaccggggaaatcg
gaggaagtggatactgatagcacctcatgttctgagtctgagtcggattccgaagcttca
agtgatgaggataatgatgaccctgaagataagaattacaggttgattgagtcatcaagt
tctagccaatatgatgatgtaataagtgattttgatgatacggaatcagaagatgaaaag
aatgaagaaggagaaaaagagtcgaatgaggggttagtacctgagcttgttgctgagagt
gaaaagcagaagaaaggcggagcaaatgttcttcgtgcacgttcactttctaagtcgaaa
aaaaagaaattaaacaatggaaatgatagtagtagcccaattcttcttactgatgaggag
gagtttgatgaggtggggtctgatggcgaggagtctaaatctgaagaggaatgcgaggtt
gatgactcggtgaagaatgttgttcaaaaggatgttgttcgaaaggataggaggactgga
aagaagattcttgaagattctgaatttatgaagtttgttgttgattctatcataaatgtt
gatgatcatgataaacttactccttttgaagagaaggaacaggttcctgtcaaggaaaca
cttcctttagtatttcggtttgaagacgaggatgaacctcctccccctgagaaagaagaa
tgggaaaaggaagttgaaaatctttttgctgaaatgcagatgtgtatcttagagtcagat
attggctttacaaatccatccgtttcgccgatgcagagtggagatttaagtaactgtcag
atgggaaaccaccaacttgttctagatgaacaaattggactcgtctgtaaagtttgttcc
tatgtgcatttggagatcaagtacatcttcccttcttttgctcagagaactcgagggagg
tatgaaagaaaacatttaggacagtcgccatcactcttggatgttggtggcttcagattt
tctgattcttctgcagtccaagattctatgattaatgaagaaggaactgtgtgggattta
gttcccccaagtgccaaatcaacaatgtatcctcatcaacgtggtggatttgagtttatg
tggaaaaacgttgctggagatataaatctcgaaaggctgagacagcccctatctgatagc
aaaggaggatgcataatctcacatccacctggcaccgggaaaacccgtctcaccatagta
tttcttcagtcatatttgaagctgtttccaaagtctcgacctgtaatcatagctccttcc
agtttgctgcttaactgggaagctgagttccagaaatgggaggtggacattcccttccac
aacttgaacagcaaagatttctctttacaggaagatgaagctactgtgagtgtctttcgc
tgtttatcccatgctggaaagagaaatccacaccttatacgaatggtgaagctgggatca
tgggttaaaggtaagagtgttttggggatcagctatgacttgttcaggattcttactgga
gatgatggagacggttacgctaaaccgattagagaaatccttcttaaatatcctggtctt
ctggtccttgaagaagggcacactgctcggaatgagcaaagccttgtctggaaagctttg
aaaaaggttgaaacagagaagcgcatagttttgtctggaactcctttccagaataacatc
aaggagttatacaacactctttgtgtagtcagtccaaagtttgctgcagatttggagcag
aaatgggcttctcttagcagttccattgacaagaatgcccgagcattggaagagcttagg
gatattatttcaccacttgtccataagtgtagtgaaaatgtaaagaaggtaagccttccg
ggtataagggacactgtaattcacttgaaacccacagatttgcagaaggagttgcttaga
aggattccagagaatccaagctccttttatgaacaaaatctggtgtctcttatctctgtt
catccttcattagtggccaagaggaaggagttctctgacttagaaagtcagctaacagaa
agaggctgtcggttggatccagataccggagtaaaaatgaaatttgttgttgagcttatc
agactttgcggtgggcggaaggagagggttataatatttagccagttacttgatcctcta
aacctgatcaaggagcaactcaattctctctttggctggactttaggtcgggagattctc
tatatggatgggaaacttgatgtgaagcagcggcagatatctataaattctcttaatgac
cctaagagtgatgtaaaagtgcttcttgcatccataaaagcctgttcagaaggaataagt
ctgataggggcctcaagagtggttttgcttgacgttctctggaatccctcagtagaacag
caagccatcagtcgagcttacaggaatgggcagaccaaatttgtgcatgtttactgtcca
gtaacatcaaaatgggaggttgacaagattgaacagcagacgagaaaaaagtaccattca
gatgttcttttgtctagggatcatgaagccaagatggatccttcatgttctgtgtcagag
gataacatactagattctatggttgagcatgagggcctccgtcatatttttgaaaagctc
tctcatgcaccacgtgtggtgccgcctacaacatgccttgattcgtctaaccaacctcca
aaaccaagcagttag
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integrated database retrieval system
