Solanum tuberosum (potato): 107060234
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Entry
107060234 CDS
T02981
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107060234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sot03400
]
107060234
DNA repair and recombination proteins [BR:
sot03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107060234
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_11
TraG-D_C
Motif
Other DBs
NCBI-GeneID:
107060234
NCBI-ProteinID:
XP_015163320
LinkDB
All DBs
Position
Un
AA seq
1202 aa
AA seq
DB search
MDSGDGSGPKQRRTRQQFLKYCADFTEKRNRSCQNGNLTPSSSPCSVNIGKEGVSCGRKR
KMAVSEGDKRKMGKWSEDARKLRKGKKKVDNGRRSKFSPGTCESIMERIFVEEIPDDDVT
DDSEDDSDDVDIIEEEEGVNNESGSGWWSNTGLKSNMLNAKDQEVVSSTSSMCGRTPVKS
VEVYTDSTSSSESESDSEASSDEDNDDPEDKNYRLIESSSSSQYDDVISDFDDTESEDEK
NEEGEKESNEGLVPELVVESKKQKKGGAYLLRARSLSMSKKKKLNNGNDSSSPILLTDEE
EFDEVGSDGEESKSEEECEVDDSVKNVVQKDVVRKDRRTGKKILEDSEFMKFVVDSIINV
DDHDKLTPFEEKEQVPVKETLPLVFRFEDEDEPPPPEKEEWEKEVENLFAEMQMCILESD
IGFTNPSVSPMQSGDLSNCQMGNHQLVLDEQIGLAQRTRGRYERKHLGQSPSLLDVGGFR
FSDSSAVQDSMINEEGTVWDLVPPSAKSTMYPHQRGGFEFMWKNVAGDINLERLRQPLSD
SKGGCIISHPPGTGKTRLTIVFLQSYLKLFPKSRPVIIAPSSLLLNWEAEFQKWEAQRTR
GRYERKHLGQSPSLLDVGGFRFSDSSAVQDSMINEEGTVWDLVPPSAKSTMYPHQRGGFE
FMWKNVAGDINLERLRQPLSDSKGGCIISHPPGTGKTRLTIVFLQSYLKLFPKSRPVIIA
PSSLLLNWEAEFQKWEVDIPFHNLNSKDFSLQEDEATVSVFRCLSHAGKRNPHLIRMVKL
GSWVKGKSVLGISYDLFRILTGDDGDGYAKPIREILLKYPGLLVLEEGHTARNEQSLVWK
ALKKVETEKRIVLSGTPFQNNIKELYNTLCVVSPKFAADLEQKWVSLSSSIDKNARALEE
LRDIISPLVHKCSENVKKVSLPGIRDTVIHLKPTDLQKELLRRIPENPSSFYEQNLVSLI
SVHPSLVAKRKEFSDLESQLTERGCRLDPDTGVKMKFVVELIRLCGGRKERVIIFSQLLD
PLNLIKEQLNSLFGWTLGREILYMDGKLDVKQRQISINSLNDPKSDVKVLLASIKACSEG
ISLIGASRVVLLDVLWNPSVEQQAISRAYRNGQTKFVHVYCPVTSKWEVDKIEQQTRKKY
HSDVLLSRDHEAKMDPSCSVSEDNILESMVEHEGLRHIFEKLSHAPRVVPPNTGLESPKP
SS
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggactcaggggatggctctggtccaaaacagaggagaactagacaacagtttttgaaa
tattgtgctgattttacagagaaaaggaacaggtcttgtcaaaatggtaatcttactccg
tcttcttcgccttgttctgtgaatattggaaaagagggtgtgagttgtgggaggaaaaga
aaaatggcagtttctgaaggtgataagagaaaaatgggaaaatggtcagaagatgcaaga
aaattaagaaaagggaaaaagaaagtggataatgggaggaggagcaagttcagtccagga
acttgtgagtctatcatggaacggattttcgtcgaggaaatacctgatgatgatgttacg
gatgattcggaggatgattctgatgatgttgatatcattgaagaggaggagggtgtaaat
aatgaatcaggttcaggttggtggtcgaatacgggcttaaagagtaatatgttgaatgca
aaagatcaggaggttgtttcatctacctcaagcatgtgtggtaggacaccggtgaaatca
gtggaagtgtatactgatagcacctcatcttctgagtctgagtcggattccgaagcttca
agtgatgaggataatgatgaccctgaagataagaattacaggttgattgagtcatcaagt
tctagccaatatgatgatgtaataagtgattttgatgatacggaatcagaagatgaaaag
aatgaagaaggagaaaaagagtcgaatgaggggttagtacctgagcttgttgttgagagt
aaaaagcagaagaaaggcggagcatatcttcttcgtgcacgttcactttctatgtccaaa
aagaagaagttaaacaatggaaatgatagtagtagcccaattcttcttactgatgaggag
gagtttgatgaggtggggtctgatggcgaggagtctaaatctgaagaggaatgcgaggtt
gatgactcggtgaagaatgttgttcaaaaggatgttgttcgaaaggataggaggactgga
aagaagattcttgaagattctgaatttatgaagtttgttgttgattctatcataaatgtt
gatgatcatgataaacttactccttttgaagagaaggaacaggttcctgtcaaggaaaca
cttcctttagtatttcggtttgaagacgaggatgaacctcctccccctgagaaagaagaa
tgggaaaaggaagttgaaaatctttttgctgaaatgcagatgtgtatcttagagtcagat
attggctttacaaatccatccgtttcgccgatgcagagtggagatttaagtaactgtcag
atgggaaaccaccaacttgttctagatgaacaaattggactcgctcagagaactcgaggg
aggtatgaaagaaaacatttaggacagtcgccatcactcttggatgttggtggcttcaga
ttttctgattcttctgcagtccaagattctatgattaatgaagaaggaactgtgtgggat
ttagttcccccaagtgccaaatcaacaatgtatcctcatcaacgtggtggatttgagttt
atgtggaaaaacgttgctggagatataaatctcgaaaggctgagacagcccctatctgat
agcaaaggaggatgcataatctcacatccacctggcaccgggaaaacccgtctcaccata
gtatttcttcagtcatatttgaagctgtttccaaagtctcgacctgtaatcatagctcct
tccagtttgctgcttaactgggaagctgagttccagaaatgggaggctcagagaactcga
gggaggtatgaaagaaaacatttaggacagtcgccatcactcttggatgttggtggcttc
agattttctgattcttctgcagtccaagattctatgattaatgaagaaggaactgtgtgg
gatttagttcccccaagtgccaaatcaacaatgtatcctcatcaacgtggtggatttgag
tttatgtggaaaaacgttgctggagatataaatctcgaaaggctgagacagcccctatct
gatagcaaaggaggatgcataatctcacatccacctggcaccgggaaaacccgtctcacc
atagtatttcttcagtcatatttgaagctgtttccaaagtctcgacctgtaatcatagct
ccttccagtttgctgcttaactgggaagctgagttccagaaatgggaggtggacattccc
ttccacaacttgaacagcaaagatttctctttacaggaagatgaagctactgtgagtgtc
tttcgctgtttatcccatgctggaaagagaaatccacaccttatacgaatggtgaagctg
ggatcctgggttaaaggtaagagtgttttggggatcagctatgacttgttcaggattctt
actggagatgatggagacggttacgctaaaccgattagagaaatccttcttaaatatcct
ggtcttctggtccttgaagaagggcacactgctcggaatgagcaaagccttgtctggaaa
gctttgaaaaaggttgaaacagagaagcgcatagttttgtctggaactcctttccagaat
aacatcaaggagttatacaacactctttgtgtagtcagtccaaagtttgctgcagatttg
gagcagaaatgggtttctcttagcagttccattgacaagaatgcccgagcattggaagag
cttagggatattatttcaccacttgtccataagtgtagtgaaaatgtaaagaaggtaagc
cttccgggtataagggacactgtaattcacttgaaacccacagatttgcagaaggagttg
cttagaaggattccagagaatccaagctccttttatgaacaaaatctggtgtctcttatc
tctgttcatccttcattagtggccaagaggaaggagttctctgacttagaaagtcagcta
acagaaagaggctgtcggttggatccagataccggagtaaaaatgaaatttgttgttgag
cttatcagactttgcggtgggcggaaggagagggttataatatttagccagttacttgat
cctctaaacctgatcaaggagcaactcaattctctctttggctggactttaggtcgggag
attctctatatggatgggaaacttgatgtgaagcagcggcagatatctataaattctctt
aatgaccctaagagtgatgtaaaagtgcttcttgcatccataaaagcctgttcagaagga
ataagtctgataggggcctcaagagtggttttgcttgacgttctctggaatccctcagta
gaacagcaagccatcagtcgagcttacaggaatgggcagaccaaatttgtgcacgtttac
tgtccagtaacatcaaaatgggaggttgacaagattgaacagcagacgagaaaaaagtac
cattcagatgttcttttgtctagggatcatgaagccaagatggatccttcatgttctgtg
tcagaggataacatactagaatccatggttgagcatgagggcctccgtcatatttttgaa
aagctctctcatgcaccacgtgtggtgccgcctaatacaggccttgaatctccaaaacca
agcagttag
DBGET
integrated database retrieval system
