Solanum tuberosum (potato): 107062111
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Entry
107062111 CDS
T02981
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107062111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sot03400
]
107062111
DNA repair and recombination proteins [BR:
sot03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107062111
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_11
Motif
Other DBs
NCBI-GeneID:
107062111
NCBI-ProteinID:
XP_015167832
LinkDB
All DBs
Position
Un
AA seq
1181 aa
AA seq
DB search
MDSGDGSSVPRRRTRQQFLKYCVEFIEKRNKLNKNGNTTHSSTICCVDIGEDDHVSCGRK
KRIKVEEKNTSCGGGDASMVRSLEKGKKKVDSAKKKFSPGTCESVMKRPFIQEISDSDSD
DDDNDVEDDSEKEESDPDPDPDVVFIGDVAADSIVNSGSRSGSWSNVGSVGLRSGTLNEA
DDVISSTSSMCRTSERRKSEEHIDIEKSDDFVDPLKSQQKFTDTTDSSESESEASSDEDN
DHPEDKDYRVHESSTSSSSQSDDIRSDCDDDYDGGKESEKDYLTTPTKNQNNEEGKGFDD
IRSGSGDDYDESKESEDDDDLDLNCLAEQNNEKGKGSDYIRMKSEDDDLSCSTNKKSKEE
GNKESNGRLVQKHRGRAYLLRPHSLSKSKKKLLNHGSCSRPVLLSDDEGSKSSSSEEGCE
AGESVENAVVQKEQKDVVQKDRKIRKKILKDSEFLRFVVDSIINGDDHDKITSPEEKRQV
PVKEPLPLIFRFEDEEPLPLEKQEWQKEIEDLFAEMDMCTLESCIGFTNSSVLPMQGSKV
SDCQMGNHQLVLDEQIGLICKVCSHVHLEMKYIFPSFADRTRGRYGRKYFGDSSSLLDAG
GFRYYDSSAVHDSAIYMEGTVWDLVPMNAKTTMYPHQREGFEFMWKNIAGDIILENLREP
LSGSRGGCIISHPPGTGKTRLTIVFLQAFLKQFPKCRPVIIAPSNLLLIWEAEFKKWEVD
IPFHNLNSKDFSFEEDEATVSVFHCLSRAGKRDPQLIRMVKLRSWAKSKSVLGISYDLFR
ILTGEDGDGYAKEIREILLKLPGLLVLEEGHTARNDQSLMWQALNKVETEKRILLSGTPF
QNNIKELYNTLSVVSPKFAADLEHKWTSLSSCIDKNVRALEELRDMIAPLVHRCGENVKK
ESLPGIRDTVIHLKPTDLQKRLLKRIPENPGSFYNQNAVSLISVHPSLVANRSEFSDLES
QLKERGCRLDPNAGVKMKFAVELIRLCDGLNERVIIFSQLLDPLKLIKEQLNSLFNWTIG
REILYMDGKLDVKQRQISINSLNDPKSDVKVLLASIKACSEGISLVGASRVVLLDVLWNP
SVEQQAISRAYRNGQTRVVHVYCPVTSKWEVDKIEQQTRKKYHSDVLLSRNEVNICQMNP
SYSLSDDNILEAMVQHERLRHIFEKLSHAPRVVPTTCFPAR
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggattcaggggatgggtcctctgttccaaggaggaggactagacaacagtttttaaaa
tattgtgtcgagtttattgagaagagaaacaagttgaataaaaatggtaatactactcac
tcttctactatttgttgtgtggatattggagaggatgatcatgtgagttgtgggaggaaa
aaaagaataaaggtggaagaaaaaaacacatcttgtggtggaggtgatgcaagtatggtg
agaagtttggaaaaaggaaaaaagaaggtggacagtgctaaaaagaagttcagtccagga
acttgtgagtccgtcatgaaaaggcctttcatccaggaaatatctgattctgactctgat
gacgatgacaatgatgttgaagatgattcggagaaggaggagagtgatcctgatcctgat
cctgatgttgtttttattggggatgttgctgcagactctattgtaaatagtggatcacgt
tcaggatcttggtccaatgtgggctctgttgggttaaggagtggtacgttgaatgaagca
gatgatgttatttcatctacctcgagcatgtgtaggactagtgagcggcgtaaatcagag
gagcacattgatattgagaaatcagatgactttgttgatcctttgaaatcacaacaaaag
tttactgatacaacagattcttctgagtcagaatctgaagcttcaagtgatgaggataat
gatcaccccgaagacaaggattaccgggtgcatgaatcatcaacatcaagttctagtcaa
tcagatgatataagaagtgattgtgatgatgactatgatggaggaaaggaatcagaaaaa
gattatctgactactcctacaaagaatcaaaacaatgaagaaggaaaaggatttgatgat
atcagaagtggttctggtgatgactatgatgaaagtaaagaatcagaagatgatgatgat
cttgatctgaattgtcttgcagaacagaacaatgaaaaaggaaaaggatctgattatatc
agaatgaaatcagaagatgatgatttgagctgttctacaaataaaaaatccaaggaagaa
ggaaataaggagtcaaatgggaggctagtacaaaagcacagaggtcgagcatatcttctt
cggccacactcactatccaagtccaaaaagaaattgttaaaccatggaagttgtagtaga
ccggttcttcttagtgacgacgaagggtctaaatcctcgtcctctgaagagggttgtgag
gctggtgagtcggtggaaaatgctgttgttcaaaaggaacaaaaggatgttgttcaaaag
gatagaaaaattcggaagaagattcttaaagattctgaatttctgaggttcgttgttgat
tctataataaatggcgatgatcatgataaaattacttctcctgaagagaagcgacaggtt
cctgtcaaagaaccacttcctttaatattccggtttgaagacgaggagcctctccccctg
gagaaacaagaatggcaaaaggaaattgaagatctttttgccgaaatggacatgtgtacc
ttagaatcatgtattggcttcacaaattcatctgttttgccaatgcagggatcaaaagtt
agtgactgtcagatggggaaccaccaacttgttcttgatgaacaaattggactcatttgt
aaagtttgttcacatgtgcatttggagatgaagtatatcttcccttctttcgctgacaga
acccgagggaggtatggaagaaagtattttggagattcatcatcgctcttggatgctggc
ggctttagatattatgattcttctgcagttcatgattctgctatttatatggaaggaact
gtgtgggatttggtccccatgaatgccaaaacaacaatgtaccctcatcagcgtgaagga
tttgagtttatgtggaagaatattgctggagacataatccttgaaaatctcagggagcct
ctatctggtagtaggggaggatgcataatctcgcatccacctggcactggaaaaacccgt
ctgaccatagtctttcttcaggcatttctgaagcagttcccaaagtgtaggcctgtgatc
atagctccatccaatttgcttcttatctgggaagccgagttcaagaaatgggaggtggac
attcccttccacaacttgaacagcaaagatttctctttcgaggaagatgaagctactgtt
agtgtcttccactgtttatcacgtgctggaaaaagagatccacagcttatacgcatggtg
aagctaagatcctgggctaaaagtaagagtgtcttgggaattagctatgacttgttcagg
attctgacgggagaagatggggatggttacgccaaagagattagagaaatacttctcaaa
ttacctggtcttctggtccttgaagaagggcacactgctaggaatgatcaaagtcttatg
tggcaagctttgaacaaggttgaaacagagaagcgtatacttttgtctggaactcccttc
cagaataatatcaaagagttgtacaacaccctctccgtagttagtccaaaatttgctgca
gatttggagcataaatggacgtctcttagcagttgcattgacaagaatgtccgtgccttg
gaagagcttagggatatgattgcaccactagttcatagatgtggtgaaaatgtaaagaag
gaaagccttccgggtataagggacactgtgatacacttgaaacccacagatttgcagaag
aggctgcttaagagaattcctgagaacccaggctccttttacaaccaaaatgcggtgtct
ctgatctctgttcacccttcattagtggcaaataggagtgagttctctgacttagaaagc
cagttaaaagaaagaggatgtcgattggatccaaatgctggagtaaaaatgaaatttgct
gttgaactgatcagactttgtgatggcttgaatgagagggttataatattcagccagtta
cttgatcctctaaaactgattaaggagcaactcaattctctcttcaactggactataggc
cgagagattctctatatggatggtaaacttgatgtaaagcagcggcagatatcaataaac
tctctgaatgaccctaagagtgatgtaaaagtgcttcttgcatcaataaaagcatgttca
gaagggataagtcttgtaggggcttcaagagtggttttgcttgacgttctctggaatccc
tcagtagaacagcaagccatcagtcgagcttacaggaatggtcagactagagttgtgcat
gtttactgtccagtgacatcaaaatgggaagttgacaagatcgaacagcagacgaggaaa
aagtatcattctgatgtccttttgtctaggaatgaagtgaatatttgccagatgaatcct
tcatattctctgtcagatgataacatactagaagccatggttcagcatgagcgtctccgt
catatatttgaaaaactatctcatgcaccacgtgtggtgcctacgacatgcttccctgca
cgatga
DBGET
integrated database retrieval system
