Stenotrophomonas oahuensis: PDM29_00780
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Entry
PDM29_00780 CDS
T10110
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sou Stenotrophomonas oahuensis
Pathway
sou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDM29_00780 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sou03019
]
PDM29_00780 (pnp)
03016 Transfer RNA biogenesis [BR:
sou03016
]
PDM29_00780 (pnp)
Enzymes [BR:
sou01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PDM29_00780 (pnp)
Messenger RNA biogenesis [BR:
sou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PDM29_00780 (pnp)
Transfer RNA biogenesis [BR:
sou03016
]
Prokaryotic type
tRNA degradation factors
PDM29_00780 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
KH_KhpA-B
DUF7680
KH_5
Motif
Other DBs
NCBI-ProteinID:
WNH52837
LinkDB
All DBs
Position
complement(159268..161376)
Genome browser
AA seq
702 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEIARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYRNEVQIIATVMSLN
PDVDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPSVTELKDSELELVVAG
TSNAVLMVESEAALLSEDVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWVAPVKNDV
LISALKEAIGPRLGEAFQVRDKLQRRDAIAAIKKDVTESLAGRVAAEGWNGAELAKEFGE
LEYSTMRNSVLDTKVRIDGRALDTVRPITVKTGVLPRTHGSSLFTRGETQAIVAITLGTA
RDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLE
AFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKSPVAGIAMGLVKEGDRFVVLS
DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH
GLTAPRAELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS
VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEGASAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcacgcttgaaaccggc
gaaatcgcccgtcaggccagtggtgccgtcatcgtcaagatggacgacaccgtgctgctg
gtcactgccgtcgccgccaagagcgcgcgcgaaggccaggacttcttcccgctgaccgtt
gattatcaggaaaagttctacgccggtggccgcatcccgggtggcttcttcaagcgcgaa
ggccgcgcgaccgagaaggaaaccctgatctcgcgtctgatcgaccgcccgatccgtccg
ctgttcccggaagactaccgcaacgaagtgcagatcatcgccacggtgatgtcgctgaac
ccggacgtggacggtgacatcgccgccctgatcggtgcttcggccgccctgtcgctggcc
ggtaccccgttcaagggtccgatcggtgctgccaaggtcggttacaagaacggtgagtac
attctcaacccgtccgtgaccgaactgaaggattcggaactggaactggtcgtggccggt
acctccaacgccgtgctgatggtcgaatccgaagccgcgctgctgtctgaagacgtgatg
ctgggtgccgtgaccttcggtcaccgcgaaatgcagaaggtcatcaacgccatcaacgag
ctgaccgtggaagccggcaccaagccgtcgacctgggttgccccggtgaagaacgacgtg
ctgatcagcgcgctgaaggaagccatcggcccgcgtctgggcgaagccttccaggttcgc
gacaagctgcagcgccgcgacgccatcgccgccatcaagaaggacgtcaccgaatcgctg
gccggccgcgtcgccgctgaaggctggaacggtgccgagctggccaaggagttcggcgag
ctggaatacagcaccatgcgcaactcggtgctggacaccaaggtccgcatcgacggccgc
gcactggacaccgtccgcccgatcaccgtgaagaccggcgtgctgccgcgtacccacggt
tcctcgctgttcacccgcggtgaaacccaggccatcgtcgccatcaccctgggcactgcg
cgtgacggccaggtcatcgacgccgttgccggtgagtacaaggaaaacttcctgttccac
tacaacttccctccgttctcggtgggtgagtgcggccgtttcggcgcgccgaagcgtcgc
gaaatcggtcacggccgtctggccaagcgcggcgtgctggctgtgatgccgtcgctggaa
gccttcccgtacaccatccgcgtggtctcggaaatcaccgaatccaacggctcctcgtcg
atggcctcggtctgcggctcgtcgctggctctgatggacgccggcgtgccggtgaagtcg
ccggttgccggtatcgccatgggtctggtcaaggaaggcgaccgcttcgtcgtcctgtcc
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtcgctggtaccgct
gagggcatctccgccctgcagatggacatcaagatcgaaggcatcaccgaagaaatcatg
aagcaggcactgcagcaggccaaggctggccgtctgcacatcctgggtgaaatggcccac
ggcctgaccgccccgcgtgccgagctgtcggactacgcgccgcgcctgctgaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggtggttccaccatccaggccatc
accaaggaaaccggcacccagatcgacatccaggacgacggcaccatcgtcatcgcttcg
gtcaatgccatcgctgcgcaggctgccaagtcgcgcatcgagcagatcacctcggacgtc
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtc
accatcctgccgggcaaggacggtctggtccacgtctcgcagatctccagcgagcgcgtc
gagaaggtcggcgacaagctgaaggaaggcgacgtggtcaaggtcaaggtgctggaagtg
gacaagcagggccgtatccgcctgtccatgaaggccgtggaagaaggcgaaggcgcttcg
gccgaataa
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