Stenotrophomonas oahuensis: PDM29_01720
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Entry
PDM29_01720 CDS
T10110
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sou Stenotrophomonas oahuensis
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sou03009
]
PDM29_01720 (rlmD)
Enzymes [BR:
sou01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PDM29_01720 (rlmD)
Ribosome biogenesis [BR:
sou03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PDM29_01720 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
Methyltr_RsmB-F
PCMT
Methyltransf_11
Cons_hypoth95
TRAM
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_12
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
WNH53015
LinkDB
All DBs
Position
complement(371072..372406)
Genome browser
AA seq
444 aa
AA seq
DB search
MARSRSRLDRTPFQTDILDLSHDGRGVARREGEGGKVTFITGALPGEVVRAEPTARNRHF
DEARTVEVLQPSAQRVEPRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLTRIGHVAPG
TVLPPLVGDSWGYRRKGRFSVRRVEKKDKTLVGFREQDPRFVADLSQCLTVIPEVGTKVS
ALSAFIETLDGKRDIPQIEFIAGDQAVMLTIRHMQPLSDSDRTAWIAFGQEHGFAISLQP
GGVESVHPLWPAEVPLSFKLEPWNVELAFRPLDFIQVNAKLNVKMIQLALDLLDAGPDER
VLDLFCGLGNFTLPLARTVREVVGVEGEAGLVARAKENAERNGLLNAQFFAADLTQDQRQ
ASWMRQGFDKLLLDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTL
VSAGAMDMFPHTAHVESIAVFERR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgatcccgctcccgccttgaccgtaccccgttccagaccgacatcctagacctg
agccatgatggccgcggcgtggcccgccgtgaaggggagggtggcaaggtcaccttcatc
accggcgcgctgcccggcgaagtcgtccgcgccgagccgaccgcccgtaatcgtcatttc
gacgaggcgcgcaccgtggaggtgctgcagccctcagcacaacgggttgagccgcgctgc
ccgcatttcggcgtgtgcgctggctgcgtgctgcagcacctggaagagtcgcagcagatc
gtggccaagcagcgggtgctgatggataacctgacccgcatcggccatgtcgcacccggc
acggtgctgccgccgctggtcggcgacagctggggctaccgtcgcaaggggcgcttctcg
gtgcgccgggtggagaagaaggacaagaccctcgtcgggttccgcgaacaggatccgcgc
ttcgtcgccgacctcagccagtgcctgaccgtgattcccgaggtgggaaccaaggtgtcg
gcgctgtcggcgttcattgagaccctggacggcaagcgcgatatcccgcagatcgagttc
attgccggcgatcaggcggtgatgctgaccatccgccacatgcagccgctcagcgacagc
gatcgtaccgcctggatcgcgttcggccaggaacatggattcgccatttcgctgcagccg
ggcggggtggagtcggtgcaccccctgtggccggccgaagtgccgctgtcattcaagctg
gaaccgtggaatgtcgagctggcgttccgcccgctggatttcatccaggtcaacgccaag
ctcaacgtgaagatgatccagctggcgctggacctgcttgatgccggcccggacgagcgc
gtgctggacctgttctgcggactcggcaacttcaccctgccgctggcgcgtaccgtgcgc
gaggtggttggcgtggagggcgaggccgggctggtggcgcgggcgaaggagaacgccgag
cgcaatggcctgctcaacgcgcagttcttcgccgccgacctgacccaggaccagcgccag
gccagctggatgcggcagggcttcgacaagctgctgcttgacccgccgcgctcgggggcg
atcgaagtgctgcagcagctgccgctgaagcagttcaagcgcatcgtctacgtcagctgc
cacccgggctcgctggcccgcgatgccggctatctggtcaacgagcagggcttcacgctg
gtcagcgccggggccatggacatgttccctcacacggcgcatgttgaaagcatcgccgtc
ttcgagcgccgctga
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