Stenotrophomonas oahuensis: PDM29_04685
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Entry
PDM29_04685 CDS
T10110
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sou Stenotrophomonas oahuensis
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sou03032
]
PDM29_04685
03400 DNA repair and recombination proteins [BR:
sou03400
]
PDM29_04685
Enzymes [BR:
sou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PDM29_04685
DNA replication proteins [BR:
sou03032
]
Prokaryotic type
DNA Topoisomerases
PDM29_04685
DNA repair and recombination proteins [BR:
sou03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PDM29_04685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Extensin_1
Toprim_2
DUF7242
Motif
Other DBs
NCBI-ProteinID:
WNH53582
LinkDB
All DBs
Position
1059216..1061705
Genome browser
AA seq
829 aa
AA seq
DB search
MPKHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNNFAMRYDLIDKN
EKHVDAIAKAAKGADDIFLATDPDREGEAISWHIAEILKERGLLKDKPMQRVVFTEITPR
AIKEAMSQPRPIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV
EREEEIEAFIAREYWSIEAACAHPSQAFNARLIKLDGQKFEQFTVTDGDTAEAARLRIQQ
AAQGSLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGVAIGDE
GTVGLISYMRTDSVNLSQDALAEIRDVIARDYGIAALPDKPNTYQTKSKNAQEAHEAVRP
TSALRTPAQVSRYLTDDERKLYELIWKRAVACQMIPATLNTVSVDLAAGSEHVFRASGTT
VVVPGFLAVYEEGKDNKSADDEDEGRKLPAMKTGDRVPLDRILAEQHFTQPPPRFTEAAL
VKALEEYGIGRPSTYSSIIQTLLFRKYVEMEGRSFRPSDVGRAVSKFLSSHFTQYVDYDF
TAKLEDELDAVSRGEEEWIPLMARFWDPFNKLVEEKKESVDRAEASGARELGTDPKTGKP
VSVRLGRFGPYAAIGSTAEDAEEKPKFASLRPGQSMHTISLEDALELFLMPRALGEDKGE
PVSVGIGRFGPFAKRGSTYASLKKEDDPYTIDLARAVFLVEEKEEIARNRIIKEFEGSDI
QVLNGRFGPYLSDGKFNGKIPKDREPASLTLAEAQQLMEETGKPVRKGFGAKKAAAKKAP
AKKAAVKKAPAAKKAPVKKAATKKAAAKKAPAKKATKKAATKKAVKKAT
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcacctgctcatcgtcgaatcgcccgccaaggccaagacgatcaacaaatac
ctcggcaaggacttcactgtcctggcctcgtatgggcatgtgcgtgacctggttcccaag
gaaggtgcggtcgaccccgacaacaacttcgcgatgcgctacgacctgatcgacaagaac
gagaagcatgtcgacgccatcgccaaggctgccaagggggctgacgacatctttctggcg
accgacccggatcgcgagggtgaggcgatcagctggcatattgccgagatcctgaaagaa
cgcggcctgctcaaggacaagccgatgcagcgtgtggtcttcaccgagatcaccccgcgc
gccatcaaggaggcgatgagccagccgcgcccgatcgccagcgacctggtcgacgcccag
caggcgcgtcgcgcactggactacctggtcggcttcaatctttcgccggtgctgtggcgc
aaggtccagcgcggcctgtccgccggccgcgtgcagagcccggcgctgcgcatgatcgtc
gagcgcgaggaagagattgaagccttcatcgcccgcgaatactggagcattgaagcggcc
tgtgcgcatccctcgcaggcattcaatgcccgcctgatcaagctggacgggcagaagttc
gagcagttcacggtcaccgacggcgacaccgccgaggccgcccgcctgcgcatccagcag
gccgcgcagggctcgctgcacgtcaccgacgtggccagcaaggagcgcaagcgccgcccg
gccccgccgttcaccacctcgaccctgcagcaggaagcatcgcgcaagctgggcttcact
acccgcaagaccatgcaggtggcgcagaagctgtacgaaggcgtggcgatcggcgacgaa
ggcacggtgggcctgatctcgtacatgcgtaccgactcggtgaacctgtcgcaggacgcc
ctggccgagatccgcgacgtaatcgcccgcgattacggcattgccgccctgcccgacaag
ccgaatacctatcagaccaagtccaagaacgcccaggaggcgcacgaagcggtgcgcccg
acctcggcgttgcgcaccccggcccaggtgtcgcgttacctgaccgacgacgagcgcaag
ctgtacgagctgatctggaagcgggccgtggcctgccagatgattccggccacgctcaac
acggtcagcgtagacctggctgccggcagcgaacatgtgttccgcgccagcggtaccacg
gtggtggtgcccggcttcctggccgtgtacgaggaaggcaaggacaacaagagcgccgac
gacgaggacgaaggccgcaagctgccggcgatgaagaccggcgaccgcgtgccgctggac
cgcatcctggccgagcagcacttcacccagccgccgccgcgcttcactgaagcggcgctg
gtgaaggcgctggaagagtacggtatcggccgtccgtcgacctattcgtcgatcatccag
accctgctgttccgcaagtacgtggaaatggaaggccgcagcttccgtccctccgacgtc
ggccgcgctgtctccaagttcctctccagccacttcacccagtacgtcgattacgacttc
accgccaagcttgaagacgagctggacgcggtgtcgcgcggcgaggaggagtggattccg
ttgatggcccgcttctgggacccgttcaacaagctggtggaggaaaagaaggaatccgtc
gaccgcgccgaggccagcggtgcgcgcgagctcggcaccgatccgaagaccggcaagccg
gtcagcgtgcgcctgggccgcttcgggccctacgccgccatcggcagcaccgccgaagat
gccgaggagaagcccaagttcgcctcgctgcgcccgggccagtcgatgcacaccatcagc
ctggaggacgcgctggagctgttcctgatgccgcgtgcgctgggtgaggacaagggggag
ccggtcagcgtgggcatcggccgcttcggcccattcgccaagcgcggcagcacctacgcc
tcgctgaagaaggaagacgacccctacaccatcgacctggcccgcgccgtgttcctggtg
gaggaaaaggaagagatcgcgcgcaaccggatcatcaaggaattcgagggcagcgacatc
caggtgctgaacggtcgcttcggtccgtacctgagtgacggcaagttcaacggcaagatt
cccaaggaccgtgagcccgcctcgctgaccctggccgaagcccagcagctgatggaagaa
accggcaagccggtgcgcaagggctttggtgccaagaaggctgccgcgaagaaggctcca
gccaagaaggcggcggtgaagaaggctccggcggcgaagaaggctccggtgaagaaggcg
gcgaccaagaaggccgctgcgaagaaggcaccggccaagaaggcgaccaagaaagccgcc
accaagaaggccgtgaagaaggccacgtag
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