Stenotrophomonas oahuensis: PDM29_05130
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Entry
PDM29_05130 CDS
T10110
Symbol
ung
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sou Stenotrophomonas oahuensis
Pathway
sou03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PDM29_05130 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sou03400
]
PDM29_05130 (ung)
Enzymes [BR:
sou01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
PDM29_05130 (ung)
DNA repair and recombination proteins [BR:
sou03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PDM29_05130 (ung)
Prokaryotic type
PDM29_05130 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
WNH53667
LinkDB
All DBs
Position
complement(1176006..1176710)
Genome browser
AA seq
234 aa
AA seq
DB search
MSDALPAIQLEPSWKAHVGDWLLRPEMRELSAFLRERKAAGAHVFPPGPQIFAAFDATPF
DQVKVVILGQDPYHGRGQAHGLSFSVMPGVPVPPSLLNMYKEIESDLGIARPDHGCLLPW
AQRGVLLLNAVLTVEEGQAGAHQKRGWEGFTDHVVETLNRERDGLVFLLWGSYAQQKGKV
IDTRRHRVLKAPHPSPLSAHRGFLGCRHFSMANDYLQQRGQPPIDWSLPPRAAL
NT seq
705 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgcattgcctgccatccagctggaacccagctggaaggcgcatgtgggcgac
tggctgctgcgcccggagatgcgtgagctgtcggctttcctgcgtgagcgcaaggcagcg
ggcgcacacgtgtttccgcccggcccgcagatcttcgccgcgttcgacgccacgccgttt
gatcaggtgaaagtggtgatcctgggccaggacccgtatcacggccgcggacaggcgcat
ggcctgagcttctcggtgatgcccggcgtgccggtaccgccgtcgctgctgaacatgtac
aaggaaattgaaagcgacctgggcatcgcgcgaccggatcacggttgcctgctgccgtgg
gcgcagcgtggcgtgctgctgctcaacgcggtactcacggttgaggaagggcaggccggc
gcacaccagaagcgcggctgggaaggcttcaccgaccatgtggtggaaaccctcaaccgc
gaacgcgacggcctggtgttcctgctctggggcagctacgcccagcagaagggcaaggtg
atcgacacccgccgccaccgcgtgctcaaggctccgcacccgtcgccgctgtcggcgcat
cggggcttcctgggctgccgccatttttcgatggccaacgattacctgcagcagcgcggg
cagccaccgatcgactggtcgctaccgccgcgcgcggcgctctga
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