Stenotrophomonas oahuensis: PDM29_05150
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Entry
PDM29_05150 CDS
T10110
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sou Stenotrophomonas oahuensis
Pathway
sou03018
RNA degradation
Brite
Enzymes [BR:
sou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PDM29_05150 (rhlB)
Messenger RNA biogenesis [BR:
sou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PDM29_05150 (rhlB)
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NCBI-ProteinID:
WNH53671
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Position
complement(1179283..1180977)
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AA seq
564 aa
AA seq
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MSDKPLTDLTFSSFDLHPALQAGLEGAGFTRCTPIQALTLPVALAGGDVAGQAQTGTGKT
LAFLVAVVNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYG
GVDYDKQREILQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERTTRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETVTAARVRQKLYFPA
DEEKIPLLLGLLSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMGLPDIEAYIEQKIPSEPVTKELLTALPRPERAPAAPGEEGDDNESVGQIFREA
REARAAEEERRGGGRGGRSGSGSGRGERRDGDRKPRGPRKPRPEGEKPAADGAAAPADAT
QAPRPPRPPRAEGAPEGAVDGERKPRKRRRRRHGRPVEGAEGASQPVTPVQVAAKPMRAA
KADDASGGFLTRIGRKIRRMLSGS
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatttgactttctcctcctttgatctgcatccggccctg
caggccggtcttgaaggagccggattcacccgctgcaccccgatccaggcgctgaccctt
ccggtcgcgctggccggtggcgatgtggctggccaggcccagaccggtaccggcaagacg
ctggccttcctggtggcggtggtcaaccgcctgctcagccgcccggcgctggccgaccgc
aagccggaagatccgcgcgcgctgatcctcgctccgacccgcgaactggccatccagatt
cacaaggacgcggtgaagttcggctccgacctgggcctgcgcttcgcgctggtctacggc
ggcgtggactatgacaagcagcgcgagatcctgcagcagggtgtggacgtgatcatcgcc
accccgggccgcctgatcgactacgtgaagcagcacaaggtggtgtcactgcacgcctgc
gagatctgcgtgctggacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcgccgcatgcccgagcgcaccacccgccagaccctgctgttcagcgcc
accctcagccaccgcgtgctggagctggcctacgagcacatgaacgagcctcagaagctg
gtggtggaagccgaaacggtgaccgccgcgcgcgtgcgccagaagctgtacttcccggct
gacgaagagaagatcccgctgctgctgggcctgctgtcgcgcagcgaaggcgcgcgcacc
atggtgttcgtcaacaccaaggtgttcgtcgagcgcgtggcgcgttcgctggagaaggcc
ggctaccgtgtcggcgtgctgtccggcgatgtgccgcagaagaagcgcgagagcctgctc
aaccgcttccagaagggtcagctggaaatcctggtcgccaccgacgtggccgcacgcggc
ctgcacatcgacggcatcaagtacgtctacaactacgacctgccgttcgacgccgaagac
tacgtgcaccgcattgggcgcaccgcccgcctgggcgaggaaggcgatgccatcagcttc
gcctgcgagcgctatgcgatgggcctgccggacatcgaggcctacattgaacagaagatt
ccatccgagccggtcaccaaggaactgctgaccgcgctgccgcgtcctgagcgtgcaccg
gcggctccgggcgaggaaggcgacgacaacgaaagcgtcggccagatcttccgcgaagcg
cgtgaggcgcgcgccgccgaggaagagcgtcgcggcggtggccgtggcggtcgttctggc
agtggtagcggtcgtggcgaacgccgcgatggcgaccgcaagccgcgcggtccgcgcaag
ccgcgcccggaaggcgagaagcccgccgctgacggtgctgctgcaccggccgacgcgacg
caggctccgcgcccgccgcgtccgccgcgtgccgaaggtgctccggaaggcgcagtggat
ggcgagcgcaagccgcgcaagcgccgccgtcgtcgccacggtcgcccggttgagggtgcc
gagggcgcctcccagccggtcacgccggtgcaggtggcggccaagccgatgcgtgcggcc
aaggctgacgatgccagtggcggtttcctgacccgcatcggccgcaagatccgccggatg
ctctccggcagttga
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