Stenotrophomonas oahuensis: PDM29_06260
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Entry
PDM29_06260 CDS
T10110
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sou Stenotrophomonas oahuensis
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sou03019
]
PDM29_06260 (hrpB)
Enzymes [BR:
sou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PDM29_06260 (hrpB)
Messenger RNA biogenesis [BR:
sou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PDM29_06260 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
AAA_30
Flavi_DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
WNH53881
LinkDB
All DBs
Position
1415929..1418433
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AA seq
834 aa
AA seq
DB search
MRTPVFPIAEQLPAILNALGSHTRLVLEAPPGAGKTTQVPLALLDASWLQGKKIIMLEPR
RVAARSAAQFMARQLGEDVGETVGYRIRFENKVSARTRVEVVTEGILTRMLQDDPLLEGV
GALLFDEFHERHLAADLGLALSLDVQAQLRDDLRIVVMSATLDGERLAQFLDAPRISSAG
RSYPVSISHFPARREEALEAQVRRAVEQALREHPGDVLVFLPGQREINRALAALDSVLPA
EVQLLPLHGELPVDQQSRVLQPDPIGQRRVVLATNVAESSVTLPGVRVVIDAGLAREPRY
DPNSGFARLDVVPIAQASADQRAGRAGRVAEGWAWRLWPQSQRLEAQRRPEMAQVELASL
ALELAAWGSDDLRFVDTPPVGALAAARELLQRLGALSDGGGLTALGRRMLALGTHPRLAA
MLLSAGAGTEQALACDLAALVEARDPLRQGGDALAARWRALAAFRQGRAPHDANRGALAA
IDAASKQWRRRLRCDTAPPGSVEAHQLGDLLAHAFPDRIAARHPTDPLRYLLANGRSARL
FDPSDLRGEPWLVAVELRFEARDALLLRAAPVDETRLRRDFPQRFVQEDVVRWDGDKRAL
VALRETRFDRIVLDSRSAGRVDPAQAAQALTDAVRELGLQALPWTDGLRQWQARTVGLRH
WMPELELPDVSDAALLAALSEWLTPAFNGKTRLDALDESTLGEALKSPLPWALRQRVDQL
APVRMAVPSGMERALHYALEADGVTPQPPVLAVKLQELFGLADTPRIADGRVPLTLHLLS
PGGRPLQVTQDLRNFWANTYAEVKKEMKGRYPKHPWPDDPWTATATHRAKPRGT
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgcgtacgcctgttttccccattgccgagcagctgccggccattctgaacgccctcggc
agccacacccgcctggtgctggaagccccgcccggcgcgggcaagaccacccaggtgccg
ctggcgctgctggacgcgtcgtggctgcaggggaagaagatcatcatgctggagccgcgc
cgggtggcggcgcgcagtgcggcgcagttcatggcccgccagctgggtgaggacgtgggc
gagacggtgggctaccgcatccgcttcgagaacaaggtatccgcacgcacccgggtggaa
gtggttaccgaaggcatcctgacccgcatgctgcaggacgacccactgctggaaggcgtg
ggcgcgctgctgttcgatgaattccatgagcgccatctggcagcggaccttgggttggca
ctgtcattggacgtgcaggcgcagctgcgggacgacctgcgcattgtggtgatgtcggcc
acgctggatggcgagcggctggcgcagtttctggatgcgccgcgcatcagcagtgcgggc
cgcagctatccggtgtcgatcagccatttcccggcacggcgcgaggaggcgctggaggcg
caggtgcggcgcgcggtggaacaggcgctgcgcgagcatccgggcgatgtgctggtgttc
ctgcccgggcagcgtgagatcaaccgcgcactggcggcgctggattcggtgcttccggct
gaggtgcagctgctgccgctgcacggcgaactgccggtagaccagcagagccgcgtgctg
cagcccgacccgatcgggcagcgccgggtggtgctggccaccaacgtggccgagtcctcg
gtcaccctgccgggggtgcgggtggtgattgatgcggggctggcgcgcgagccgcgctat
gaccccaacagcggcttcgcgcggctggacgtggtgccgatcgcacaggcttcggccgac
cagcgcgccggccgtgccgggcgcgtggccgagggctgggcgtggcggctgtggccgcag
tcgcagcggctggaggcacagcgccggccggagatggcccaggtggaactggcctcgctg
gcgctggagctggccgcctggggcagcgatgacctgcgcttcgtcgacacgccgccggtg
ggcgcgctggcggcggcgcgggaactgctgcagcggctgggcgcgctgagcgatggcggc
ggcctcaccgcactgggccggcgcatgctggcgctgggcacgcacccgcgactggcggcg
atgctgctgtcggcgggggccggcactgagcaggcgctcgcctgcgacctcgctgcgctg
gtggaagcgcgcgacccgctgcgccagggcggtgatgccttggcagcgcgctggcgggcg
ctggcagcgttccgtcagggccgggcaccgcacgatgccaatcgcggtgcgctggccgcc
attgatgccgccagcaagcagtggcgacgccggctgcgctgcgacaccgccccgcccggc
tcggtggaggcacaccagctcggcgacctgctggcgcatgccttcccggaccggattgcc
gcccgccatcccaccgatccgctgcgctacctgctggccaacggccgcagcgcgcgcctg
ttcgaccccagcgacctgcgcggcgagccgtggctggtggcggtggaactgcgcttcgag
gcacgcgatgcactgctgctgcgcgccgccccggtggacgaaacccgcctgcgccgcgac
ttcccgcagcgcttcgtgcaggaagatgtggtgcgctgggacggcgacaagcgggcgctg
gtggcgctgcgcgagacccgcttcgaccgcatcgtgctggacagccgttccgccgggcgg
gtggatccggcacaggccgcacaggcgctgaccgacgcggtgcgcgaactcggcctgcag
gcactgccgtggaccgacgggctgcgccaatggcaagcgcgaaccgtggggctgcgccac
tggatgccggaactggagctgcccgatgtgtccgacgcggcgttgctggcggcgctgtcc
gagtggctgaccccggccttcaacggcaaaacccggctggatgcgctggatgagagcacg
ctgggcgaagcgctgaagtcgccgctgccgtgggcactgcggcaacgcgtggaccagctg
gctccggtacggatggcagtgccctcgggcatggagcgggcccttcattacgcactggag
gcagatggcgtcaccccgcagccgccggtgctggcggtgaagctgcaggagctgttcggg
ctggccgacaccccgcgcattgccgacggccgcgtgccgctgaccctgcacctgctgtca
cccggcgggcggccgctgcaggtgacccaggacctgcgcaacttctgggccaacacttat
gcggaagtcaaaaaggaaatgaaggggcggtatcccaagcatccgtggccggatgacccg
tggaccgccaccgccacgcatcgcgccaagccgcgcgggacgtag
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