KEGG   Stenotrophomonas oahuensis: PDM29_06545
Entry
PDM29_06545       CDS       T10110                                 
Name
(GenBank) RtcB family protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
sou  Stenotrophomonas oahuensis
Brite
KEGG Orthology (KO) [BR:sou00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sou03016]
    PDM29_06545
Enzymes [BR:sou01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     PDM29_06545
Transfer RNA biogenesis [BR:sou03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    PDM29_06545
 Prokaryotic type
   tRNA splicing ligases
    PDM29_06545
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: WNH53938
UniProt: A0ABY9YSK8
LinkDB
Position
complement(1483448..1484677)
AA seq 409 aa
MCNTHTNNYDVIQQPGAAPIKLWTRGVPLEDAVREQLQNIAKLPFIHRWIAVMPDVHLGK
GATVGSVVPTIGAIVPAAVGVDIGCGMIAARTTLVASDLPDNLAELRSAIERAVPHGRTV
GPRDKGAWNAPPELAIEGWSQLVADFELICQRHPRLKNTNNLKHLGTLGTGNHFVEVCLD
QEDRVWFMLHSGSRGVGNAIGNHFIELAKQDMRRWMINLPDQDLAYLPEGSEHYGDYVFA
VDWAQRYARLNREIMMRHVVEAARKVISKPFEAAAEAVNCHHNYVSREHHFGKDVFVTRK
GAVSARKGELGIIPGSMGAKSFIVRGLGNADSFNSCSHGAGRVMSRTQARKLITVDEHAK
ATAHVECRKDAEVVDESPAAYKPIEAVMEAQRDLVEIVHTLRQVVCVKG
NT seq 1230 nt   +upstreamnt  +downstreamnt
atgtgcaacacccacaccaacaactacgacgtcatccagcagccgggcgctgcgccgatc
aagctctggacccgcggcgtgccgctggaagacgccgtgcgcgaacagctgcagaacatt
gccaagctgcccttcatccatcgctggatcgcggtgatgcccgacgtgcacctgggcaag
ggggccacggtgggctcggtggtgccgaccatcggcgcgatcgtgccggcggcagtgggc
gtggatatcggctgcggcatgatcgccgcgcgcaccaccctggtcgccagcgacctgccc
gacaacctggccgagctgcgcagcgcgatcgagcgcgcggtgccgcatggccgtaccgtc
ggaccgcgtgacaagggcgcgtggaacgccccgccggagctggcaattgaaggctggtcg
cagctggtggccgacttcgagctgatctgccagcgtcacccgcgcctgaagaacaccaac
aacctcaagcacctgggcaccctgggtaccggcaaccacttcgtcgaagtgtgcctggac
caggaggaccgcgtgtggttcatgctgcactccggctcgcgcggggtgggtaacgccatc
ggcaaccacttcatcgagctggccaagcaggacatgcgtcgctggatgatcaacctgccg
gaccaggatcttgcctacctgccggaaggcagcgagcactacggcgactatgtgttcgcg
gtggactgggcacagcgctacgcccgcctcaaccgcgagatcatgatgcgccacgtggtc
gaggctgcacgcaaggtgatcagcaagccgttcgaggccgcggccgaggcggtgaactgc
caccacaactacgtcagccgtgagcaccacttcggcaaggacgtgttcgtgacccgaaag
ggcgcggtgagcgcacgcaagggcgagctgggcatcattccgggcagcatgggggccaag
agcttcatcgtgcgaggcctaggcaatgccgacagcttcaacagctgcagccacggcgca
gggcgtgtgatgagtcgaacccaggcgcgcaagttgatcacggtcgacgagcacgccaag
gccaccgcgcacgtggaatgccgcaaggacgcggaggtggtggacgagtcgccggccgcc
tataagccgattgaagcggtgatggaggcccagcgcgacctggtggaaatcgtgcacacg
ctgcgtcaggtggtgtgtgtgaagggatga

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