Stenotrophomonas oahuensis: PDM29_06555
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Entry
PDM29_06555 CDS
T10110
Symbol
rtcR
Name
(GenBank) RNA repair transcriptional activator RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
sou Stenotrophomonas oahuensis
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sou03000
]
PDM29_06555 (rtcR)
Transcription factors [BR:
sou03000
]
Prokaryotic type
Other transcription factors
Others
PDM29_06555 (rtcR)
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Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA
Mg_chelatase
AAA_5
AAA_22
AAA_16
NACHT
AAA_19
AAA_30
MCM
AAA_2
T2SSE
IstB_IS21
AAA_14
ATPase_2
FAA_hydro_N_2
AAA_7
AAA_29
Motif
Other DBs
NCBI-ProteinID:
WNH53940
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All DBs
Position
1486793..1488388
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AA seq
531 aa
AA seq
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MDKRQVVFGMLGTQLDTGSGPKRWEKWRPTVALGMHEDFVPDRVELLLDERRFGKLATQV
CEDLVQMAPDTVVHRHDVYMADPWEFEGVYACLHDFLAAYPFAPDEEDYYIHITTGTHVS
QICWFLLTESRHFPGRLLQTSPPRKQDSDQAGTYALIDLDLSRYDRIAQRFAQQQLQDRD
LLKSGIATRNAAFNRMIEQIEIVATRSRAPMLLTGPTGAGKSHLARRVFDLKKLKHQLPG
RFVEVNCATLRGDGAMSTLFGHTKGAYTGAASDRAGLLRSAHQGLLFLDEIGELGLDEQA
MLLRALEDKRFLPVGSDREVESDFQLIAGTNRDLQEAVRAGRFREDLLARLNLWTYQLPG
LAQRREDIEPNLAFELERFSREQHQQVRFNAEARARYLSFATGADAAWAGNFRDLGASVM
RLATLANAGRIQTEGVEEEIGRLRQQWAGGVMPSPLDALLGDAVQELDRFDRVQLEEVVR
VCAQAKSLSAAGRELFAVSRTQRASTNDADRLRKYLARFGLDWEQVRGARS
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacaagcggcaagtggtgttcggcatgctcggtacccaactcgataccggctcgggt
cccaaacgctgggaaaagtggcgccccacggtcgccctgggcatgcacgaggacttcgtg
ccggaccgggtggagctgctgctggacgagcgccgcttcggcaagctggctacgcaggtc
tgcgaggacctggtgcagatggcaccggacaccgtggtgcaccgccacgacgtgtacatg
gcggatccctgggagttcgagggggtctatgcctgcctgcatgacttcctggccgcgtac
ccgttcgcgccggacgaggaggattactacatccacatcaccaccggcacgcacgtgagc
cagatctgctggttcctgctgaccgaaagccgccacttccccggccgcctgctgcagacc
tcgccgccgcgcaagcaggacagcgaccaggccggcacctatgcactgatcgacctggac
ctttcgcgctacgaccgcatagcacagcgcttcgcccagcagcagctgcaggaccgcgac
ctgctcaagagcggcattgccacccgcaacgcggcattcaaccggatgatcgagcagatc
gagatcgtcgccacgcggtcacgcgcgccgatgctgttgaccggccccaccggtgccggc
aagagccatctggcccggcgcgtgttcgacctgaagaagctcaagcaccagctgccgggt
cgcttcgtggaggtgaactgcgccaccctgcgtggcgatggtgcgatgagcacgctgttc
gggcacaccaagggcgcgtataccggggctgccagcgaccgtgccggcctgctgcggtcg
gcgcatcaggggctgctgttcctggacgagattggcgagctgggcctggacgaacaggcg
atgctgctgcgggcactggaggacaagcggttccttccggtgggcagtgaccgcgaggtg
gagagcgacttccaactgatagccggcaccaaccgcgacctgcaggaggcggtgcgtgcc
gggcggttccgcgaggatctgctggcgcgcttgaacctgtggacctaccagctgcctggg
ctggcgcaacggcgcgaggatatcgagccgaacctggcgtttgagctggagcgcttctcg
cgtgaacagcaccagcaggtgcggttcaatgcggaagcgcgggcccgttacctttcattc
gcgaccggcgcagacgcagcgtgggccggcaacttccgcgacctgggggcgtcagtgatg
cggctggcgacgctggccaatgcaggacgtatccagaccgaaggcgtggaggaagagatc
gggcggctgcggcagcagtgggcgggtggtgtgatgccctcgccgctggatgcattgctg
ggcgatgctgtgcaggagctcgaccggtttgatcgggtgcagctggaagaagtggtgcgg
gtgtgcgcgcaggcgaagtcgttgtcggcggccgggcgtgagctgtttgcggtgtcacgg
acccagcgcgccagcaccaatgatgcggaccggttgcgcaaatatctggcacggttcgga
ttggattgggagcaggtgcgcggcgcacggagttga
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