Stenotrophomonas oahuensis: PDM29_06575
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Entry
PDM29_06575 CDS
T10110
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sou Stenotrophomonas oahuensis
Pathway
sou03420
Nucleotide excision repair
sou03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PDM29_06575 (uvrD)
03430 Mismatch repair
PDM29_06575 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sou03400
]
PDM29_06575 (uvrD)
Enzymes [BR:
sou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PDM29_06575 (uvrD)
DNA repair and recombination proteins [BR:
sou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PDM29_06575 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PDM29_06575 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WNH53944
LinkDB
All DBs
Position
complement(1490174..1492366)
Genome browser
AA seq
730 aa
AA seq
DB search
MDVSHLLDGLNPAQREAVSAPPGHHLVLAGAGSGKTRVLTHRIAWLHEVFGVPTHGIFAV
TFTNKAAGEMRHRIDAQLPHGSRGMWIGTFHGLAHRLLRLHFAEAKLPDSFQVLDSDDQL
RLVKRVVQQLEIDDGKYPPKQIAWWINEQKDEGRRPQHIQPEPSDHWLETMRQAYAAYQE
RCDRAGLVDFAELLLRAHELLRDNPALLAHYRSRFREILVDEFQDTNAIQYAFVRVLAGD
SGHVFVVGDDDQAIYGWRGAKVENVQRFLKDFPGAQTVRLEQNYRSTANILGAANAVIAH
NPDRIGKELWTDSGDGEPIDLYAAYNEMDEARYVVERARQWVRDGGSYADAAVLYRSNAQ
SRAFEEALISEQVPYRVYGGMRFFERAEIKDALAYLRLMTNRDDDAAFERAVNTPTRGIG
DRTLDEVRRLARSQAISLWEATMLTAQGNELAARARNALAGFLTLVNQLQHEAGEMTLAE
RIDHVLLRSGLRDHWAKESRNSLDSESRSDNLDELISVASRFVRREDDIEESGETMSELV
AFLSYASLEAGDGQAQAGEEGVQLMTLHSAKGLEFPLVFLAGMEDGLFPSARSLEESGRL
EEERRLAYVGITRARQKLVLSYAESRRIHGQDNYNVPSRFLREIPRELLNEVRPKVQVAR
PASLGANRVMGHAAIEAPPLKLGAMVTHARFGEGMVTDYEGSGAHARVQVEFAEAGSKWL
VMAYANLTVL
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggatgtctcccacctgctcgacgggctcaaccccgcccagcgcgaggccgtgtccgcc
ccgcccggccaccatctggtgttggccggtgccggttccggcaagacccgcgtactgacc
caccgcatcgcctggctgcatgaagtcttcggcgtgcctacccatggcattttcgcggtc
accttcaccaacaaggccgccggtgaaatgcgccaccgcatcgacgcgcagctgccgcac
ggcagccgcggcatgtggatcggcaccttccacggcctggcccaccgcctgctgcgcctg
catttcgctgaagccaagctgcccgacagcttccaggtgctggattcggacgaccagctg
cgactggtcaagcgcgtggtgcagcagctggaaatcgacgacggcaagtacccgcccaag
cagattgcctggtggatcaacgagcagaaagacgaaggccgccgcccgcagcacatccag
cccgagcccagcgaccactggctggagaccatgcgccaggcctacgcggcctaccaggag
cgctgcgaccgcgccgggctggtggatttcgccgagctgctgctccgcgcgcatgagctg
ctgcgcgacaacccggcgttgctggcgcactaccgttcacgcttccgcgagattctggtg
gacgagttccaggacaccaatgccatccagtacgccttcgtgcgcgtgctggccggcgac
agcggccacgtcttcgtggtcggcgacgacgaccaggccatctacggctggcgtggtgcc
aaggtggagaacgtccagcgcttcctgaaagacttccccggcgcgcagaccgtgcgcctg
gagcagaactaccgttccaccgccaacatcctcggcgcggccaatgcggtgatcgcacac
aaccccgaccgcatcggcaaggaactgtggaccgacagcggcgacggcgagccgatcgac
ctgtacgcggcgtacaacgaaatggacgaagcgcgttacgtggtcgagcgagcgcgccag
tgggtgcgagacggcggcagctatgccgacgccgccgttctgtaccgcagcaacgcgcag
tcgcgcgcgtttgaagaagcgctgatctccgagcaggtgccgtaccgtgtgtatggcggc
atgcgcttcttcgagcgcgccgaaatcaaggacgcgctggcttacctgcgcttgatgacc
aaccgcgatgacgacgccgccttcgagcgcgcggtgaacacgccgacgcgcggcattggc
gaccgcaccctggacgaagtgcgccggctggcccgcagccaggcgatctcgctgtgggaa
gccaccatgctcaccgcgcagggcaacgagctggccgcccgcgcccgcaacgcgctggct
gggttcctcaccctggtcaaccagctgcagcacgaagccggtgagatgaccctggccgag
cgcatcgaccatgtactgctgcgttcgggcctgcgtgatcactgggccaaggaaagtcgc
aattctctggattccgaatcgcgttcggacaacctggacgaactgatctcggtggcgtcg
cgctttgttcgccgcgaggacgacatcgaggaatccggcgagaccatgagcgagctggtc
gcgttcctgtcctacgcgtcgttggaggcgggcgacggccaggcccaggcgggcgaggag
ggcgtgcagctgatgaccctgcattcggccaagggcctggagttcccgctggtgttcctg
gccggcatggaagacggactattccccagcgctcgttcgctggaggagagcgggcggctg
gaggaggagcgccgcctggcctacgtgggcatcacccgcgcgcggcagaagctggtgctc
agttacgccgagtcgcgccgcatccacggccaggacaactacaacgtgccctcgcgcttc
ctgcgcgagatcccgcgcgagctgctcaacgaagtgaggccgaaggtgcaggtggcccgt
ccggcttcgctgggggccaaccgggtaatgggccatgccgccatcgaagcgccgccgttg
aagctgggggccatggtcacccacgcccgcttcggcgaaggcatggtcaccgactacgaa
ggcagcggcgcgcacgcgcgcgtgcaggtggagttcgccgaagctggtagcaagtggctg
gtgatggcctacgccaatctgacggtcctgtga
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