Stenotrophomonas oahuensis: PDM29_07605
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Entry
PDM29_07605 CDS
T10110
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sou Stenotrophomonas oahuensis
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sou03032
]
PDM29_07605
03400 DNA repair and recombination proteins [BR:
sou03400
]
PDM29_07605
Enzymes [BR:
sou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PDM29_07605
DNA replication proteins [BR:
sou03032
]
Prokaryotic type
DNA Topoisomerases
PDM29_07605
DNA repair and recombination proteins [BR:
sou03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PDM29_07605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF6396
Motif
Other DBs
NCBI-ProteinID:
WNH54132
LinkDB
All DBs
Position
1754318..1755370
Genome browser
AA seq
350 aa
AA seq
DB search
MPVRRTATPEAQAARAAGLRYVSDEQPGIARRRAGKGFSYRDADGHAVRDAATLARIRAL
AIPPAYTDVWICALDNGHLQATGRDARRRKQYRYHADWARVRGDGKFDRVIAFGKALPAL
RRRLRRDMKLPGFPQDKVLAIVISLLADTLVRVGNPEYARDNRSYGLTTLRNHHLALVRG
GRARMHFRGKSGQVQDVEIDDKRLVELIRRCQQLPGQALFQYRDDDGSLQPVDSGQVNAY
LRDAMGEDFSAKDFRTWGGTVAALKQFAATELPDKPSERALATLQKQVVCEVATLLGNTP
SVCRKAYIDPSVFEGWRAGSLAKLAGLRGERQWEAATLRFLRSARRVAKA
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtccgacgcactgccacccccgaagcccaggccgcccgcgcggccggcctgcgc
tatgtcagcgacgagcagccgggcatagcccgccgccgtgccggcaaaggcttcagttac
cgcgatgctgacgggcatgcagtgcgcgacgcggccacgctggcgcggatccgcgcgctg
gcgattccgccggcctacaccgacgtctggatctgcgcgctggacaacggccacctgcag
gccaccggccgcgatgcgcgacggcgcaagcaatatcgctatcacgccgactgggcgcgg
gtgcgcggcgacggcaagttcgaccgcgtgattgccttcggcaaggcgttgccggcgctg
cggcgacggctgcgccgcgacatgaagctgcccggcttcccgcaggacaaggtgctggcc
attgtgatctcgctgctggccgacaccctggtgcgggtaggcaaccccgagtacgcccgc
gacaaccgctcctatgggctgaccacgctgcgcaaccaccatctggcgctggtccgtggc
gggcgcgcgcgcatgcacttccgtgggaaatcgggccaggtgcaggacgtggaaatcgat
gacaagcggctggtcgaactgatccggcgctgccagcagttgcccgggcaggcgctgttc
cagtaccgcgacgacgacggctccctgcagccggtggattcggggcaggtcaacgcctac
ctgcgcgacgccatgggcgaggatttcagtgccaaggactttcgcacctggggcggcact
gtggccgcgctgaaacagttcgctgcgaccgagttaccggacaagcccagcgagcgcgca
ttggcgacgctgcagaagcaggtcgtctgtgaagtggccaccctgctgggcaacacgccc
tcggtgtgccgcaaggcctacatcgaccccagcgtgtttgaaggctggcgtgccggcagc
ctggccaagctggccggcctgcgcggcgaacgccaatgggaagcggccacgctgcgcttc
ctgcgcagcgcccggagggtggcaaaagcgtag
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