Stenotrophomonas oahuensis: PDM29_10195
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Entry
PDM29_10195 CDS
T10110
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sou Stenotrophomonas oahuensis
Pathway
sou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDM29_10195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sou03019
]
PDM29_10195
Enzymes [BR:
sou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PDM29_10195
Messenger RNA biogenesis [BR:
sou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PDM29_10195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WNH50769
LinkDB
All DBs
Position
complement(2322385..2323803)
Genome browser
AA seq
472 aa
AA seq
DB search
MSFEDLGLAPFLLRALSEQGYENPTPIQEQAIPLALAGRDLLAGAQTGTGKTAAFGLPLL
QHLGTNPQAVDGPRKPRALVLAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQFD
VLRRGVDLLVACPGRLIDHLERRSVDLSGIEVLVLDEADRMLDMGFLPSIKRILAKLPRQ
NRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHKVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVL
VATDIAARGIDINELPKVINYDLPMVAEDYVHRIGRTGRNGSTGQAISLVAQDEAKLLRQ
IVRLLNRDMDIRDVPGFEPQTPIRWGNSAPGKAEIPGGERAPRKNHARRPHSEAPRHAHA
GPKKSSGGQRDGAGRGAPRGGQPQGQRRGGAGGGGGRGQGGRGQGGGGHRAG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaagacctgggccttgccccgttcctgctgcgcgcgttgtccgagcagggc
tatgaaaacccgaccccgatccaggaacaggccattccgctggccctggccgggcgcgac
ctgctggccggtgcacagaccggtaccggcaagaccgctgcttttggtttaccgctgctg
cagcacctgggcaccaacccgcaggccgtggacggcccgcgcaagccgcgtgcgctggtg
ctggccccgacccgcgaactggccacccaggtgcatgacagcctgcgcggatacagcaag
tacctgcgcattcccagcgcctgcatctacggcggcgtgggcatgggcaaccagttcgac
gtgctgcgccgtggcgtggacctgctggtggcctgcccgggccgcctgatcgaccacctg
gagcgtcgcagcgtcgacctgtccggcattgaagtgctggtgctggacgaagccgaccgc
atgctggacatgggcttcctgccgtcgatcaagcgcatcctggccaagctgccgcgccag
aaccgccagaccctgctgttctctgcgacgtttgaagacaacatccgccagctggcgctg
gagttcatgcgcaacccggagcagatccaggtgacgccgaagaacaccgtggccgaaacc
atcacccacaaggtgcatccggtagacggcgcccgcaagcgcgatctgctgctgcacctg
ctggcgcaggacagccgcgagcagaccctggtgtttgcccgcaccaagcacggcagtgac
aagctggccacgttcctggaaaagtcgggcatcaagaccgcagcgatccacggcaacaag
agccagggccagcgtctgcgtgcactgggcgacttcaaggccggccgggtgaccgtgctg
gtggcgaccgatatcgcggcgcgcggcatcgacatcaacgaactgccgaaggtcatcaac
tatgacctgccgatggtggccgaagactacgtgcaccgtatcggccgtaccggccgtaac
ggttcgaccggccaggcgatttcgctggtggcgcaggacgaagccaagctgctgcgccag
atcgtgcgcctgctgaaccgcgacatggacatccgcgacgtgccgggcttcgagccgcag
acgccgatccgctggggcaacagcgcgccgggcaaggcggagattccgggtggcgagcgc
gcaccgcgcaagaaccacgcccgccgtccgcacagcgaggctccgcgccacgcgcatgcg
ggcccgaagaagagcagcggcggccagcgtgacggtgccggtcgtggtgccccgcgcggc
ggccagccgcagggccagcgccgtggcggtgccggcggcggcggtggtcgcggccagggc
ggccgcggtcagggcggtggtggtcaccgcgcgggttga
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