Stenotrophomonas oahuensis: PDM29_10320
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Entry
PDM29_10320 CDS
T10110
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
sou Stenotrophomonas oahuensis
Pathway
sou00521
Streptomycin biosynthesis
sou00523
Polyketide sugar unit biosynthesis
sou00525
Acarbose and validamycin biosynthesis
sou00541
Biosynthesis of various nucleotide sugars
sou01100
Metabolic pathways
sou01110
Biosynthesis of secondary metabolites
sou01250
Biosynthesis of nucleotide sugars
Module
sou_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
PDM29_10320 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
PDM29_10320 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
PDM29_10320 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
PDM29_10320 (rfbB)
00525 Acarbose and validamycin biosynthesis
PDM29_10320 (rfbB)
Enzymes [BR:
sou01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
PDM29_10320 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
DUF6301
KR
Motif
Other DBs
NCBI-ProteinID:
WNH50794
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All DBs
Position
2352225..2353280
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AA seq
351 aa
AA seq
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MPTWLVTGGAGFIGGNFVLEAVAKGVRVINLDALTYAGNLKTLTSLEGDSNHIFVHGDIG
DHSLVTRLLTEFQPDAVLNFAAESHVDRSIDGPGAFIQTNVVGTLALLEAVRDYWKALPA
DKGEAFRFLHVSTDEVYGTLGETGKFSETTQYAPNSPYSASKAASDHLVRAFHHTYGLPV
LTTNCSNNYGPYHFPEKLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAK
GRVGETYNVGGNSEKQNIEVVQAICALLDARRPRDDGQPRSSQITYVADRPGHDRRYAID
ASKLKDQLGWEPKYTFEQGIAFTVGWYLDNQEWVNGVLDGSYRLQRIGTSA
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
gtgcccacatggcttgtcaccggcggtgccggatttattggcggtaacttcgtactggaa
gccgtcgccaagggtgtgcgcgtcatcaatctggacgccctgacttatgcgggcaatctg
aaaaccctgacttcgctggagggggattccaaccacatattcgtgcatggcgacattggc
gaccactcgctggtgacccgtctgctgaccgaattccagcccgatgccgtgctgaacttc
gccgccgagagccacgtggaccgctccatcgacggcccgggtgccttcattcagaccaac
gtggtcggtaccctggcgctgctcgaagccgtgcgcgactactggaaggccctgccggcc
gacaagggcgaggcattccgcttcctgcatgtgtccaccgacgaggtgtacggcaccctg
ggcgagaccggcaagttcagtgaaacgacccagtacgcccccaattcgccgtattcggcg
tccaaggcggcctcggaccacctggtgcgcgcgttccaccacacctacgggctgccggta
ctgaccaccaactgctcgaacaattacggcccgtaccacttcccggagaagctcattccg
ctggtgatcgccaaggcgctggctggcgaaccgctgccggtctacggcgacggcaagcag
gtgcgtgactggctgttcgtcagcgaccactgcgaggcgatccgcaccgtgctggccaag
ggccgggtcggcgaaacctacaacgtcggcggcaactcggaaaagcagaatattgaagtg
gtgcaggcgatctgcgcgctgcttgatgcgcgccgcccgcgcgatgatggccagccgcgt
agcagccagatcacctacgtggccgaccgcccggggcatgaccgccgctacgcgattgac
gccagcaagctgaaagaccagttgggctgggaaccgaaatacaccttcgaacagggcatt
gctttcactgttggctggtacctggacaaccaggaatgggtcaacggcgtgctggacggc
agctatcgcctgcagcgcatcggcaccagtgcctga
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