Stenotrophomonas oahuensis: PDM29_11465
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Entry
PDM29_11465 CDS
T10110
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sou Stenotrophomonas oahuensis
Pathway
sou03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PDM29_11465 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sou03021
]
PDM29_11465 (rpoC)
03400 DNA repair and recombination proteins [BR:
sou03400
]
PDM29_11465 (rpoC)
Enzymes [BR:
sou01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PDM29_11465 (rpoC)
Transcription machinery [BR:
sou03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PDM29_11465 (rpoC)
DNA repair and recombination proteins [BR:
sou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PDM29_11465 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WNH51001
UniProt:
A0ABY9YK52
LinkDB
All DBs
Position
2609934..2614157
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQYLQARQEHGDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLVEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRALENKKGEGMAFANIAEVKRAYDNR
VVELHAKVKVRITEVMTDEEGNKQNKTSIVDTTIGRALLAEILPEGLPFALANVELTKKN
ISRLINSSYRQLGLKDTVVFADKLMYTGFAYATRAGVSIGIDDMLIPDEKRGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTEKVVNAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTTEGLTMTPIVEGGDVVEPLKDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEQWVAKLEDAGVQSIKVRSTISCESAFGVCSNCY
GRDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FNNLKSVEHASGSLVAVSRSGEISVLDAHGRERERYKLPYGSMIASKDGDAVKAGQTVAN
WDPHNHPIVSEVAGFIRFIDFIDGVTVIEKTDELTGLASREITDPKRRGSQAKDLRPIVR
IVDAKGNDLSIPGTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQVIVFE
GEHVTKGETIVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDQGSSKFLNGEQAERQRVIEENARLSARNELIARFDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTSDNLRGLKENVIVGRLIPAGTGLAYHANRRRNATGLTESE
LQTLVGTPAVAEAPAVEASTDAESNED
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcgcgctggcctcgccggacctgatccgttcgtggtccttcggcgaagtgaagaag
ccggaaaccatcaactaccgtaccttcaagccggagcgtgacggcctgttctgcgccgcc
atcttcggaccggtcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgaaaagtgcggcaccgaagtgaccctggccaaagtgcgccgtgag
cgcatgggccacatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctatgtggtgaccgagccgggcctgaccgccctggagcgccgccagctgctg
accgaagaacagtacctgcaggcgcgccaggagcacggcgacgacttcgacgccgccatg
ggcgcagaagccgtgtacgaactgctgcgcaccatcgacctgcagtcggaaatgacccgc
ctgcgcgaagaaatcgccagcaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctggtcgaagccttcctggaatcgggcaaccgtccggaatggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggttccgctggacggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgtaacaaccgtctgcgc
cgcctgctcgagctgaacgcgccggacatcatcgtgcgcaatgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgtcgcggccgtgccatcaccggcaccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagcagggtcgcttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggtccgtac
ctgcgcctgcaccagtgcggcctgccgaagaagatggcgctggaactgttcaagccgttc
gtgttcgccaagctgcagcgtcgtggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagctgaagtctgggacatcctggaagaagtcatccgcgaacacccg
gtcatgctgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggccatccagctgcacccgctggtgtgtactgcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctttcgctggaagcccagctggaagcg
cgtgcgctgatgatgtcgaccaacaacattctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgctgggtctgtactacatgacccgcgccctggaaaacaag
aagggcgagggcatggccttcgccaacatcgccgaagtcaagcgcgcctatgacaaccgc
gtggtggaactgcacgccaaggtcaaggtccgcatcaccgaagtgatgaccgacgaggaa
ggcaacaagcagaacaagacctcgatcgtggacaccacgatcggtcgcgccctgctggct
gaaatcctgccggaaggcctgccgttcgcgctggccaacgtcgaactgaccaagaagaac
atctcgcgcctgatcaactccagctaccgtcagctgggcttgaaggacacggtcgtgttc
gccgacaagctgatgtacaccggcttcgcctacgcaacccgcgccggcgtgtcgatcggt
atcgacgacatgctgatcccggacgaaaagcgcggcatcctcaccgaggccgaagccgaa
gtgctggaaatccaggagcagtaccagtcgggtctggtcaccgctggcgagcgctacaac
aaggtggtcgacatctggtcgcgcaccaacgaacgcatcgccaaggcgatgatggacacc
atcggtaccgagaaggtcgtcaatgccaagggtgagaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcgcgtggttcgcaggcgcagatccgtcagctg
gccggcatgcgtggcctgatggcccgtccggacggctcgatcatcgaaacgccgatcaag
gcgaacttccgtgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctgaagaccgcgaactcgggttacctgacccgtcgtctg
gtcgacgtggcgcaggacgtggtcatcaccgaagtggactgcggtaccaccgaaggcctg
accatgaccccgatcgtggaaggcggcgacgtcgtcgaaccgttgaaggaccgcgtgctg
ggtcgtgtcgtggccgaggacgtgttcctgccgggcaacgacgaagatccgatcgtgacc
cgcaacaccctgctggacgaacagtgggtggccaagctggaagacgccggcgtgcagagc
atcaaggtgcgctcgaccatcagctgcgaatccgcgttcggcgtgtgctccaactgctac
ggccgcgacctggcccgtggtcacctggtcaacatcggtgaagcggtcggcgtcatcgcc
gcgcagtcgatcggtgagccgggtacccagctcaccatgcgtaccttccacatcggtggt
gcggcatcgcgtgcggctgccgtggacaacatcacggtgaagaccaccggttcggtgaag
ttcaacaacctgaagtcggtcgaacacgccagtggttcgctggtggccgtgtcgcgctcg
ggcgaaatctcggtgctcgatgcccacggccgtgagcgtgagcgttacaagctgccgtac
ggctcgatgatcgcgtcgaaggacggtgatgcagtgaaggctggccagaccgtggccaac
tgggatccgcataaccacccgatcgtgtccgaagtggccggtttcatccgcttcatcgac
ttcatcgacggcgtcaccgtcatcgagaagaccgacgaactgaccggcctggcttcgcgc
gaaatcaccgatccgaagcgtcgcggttcgcaggcgaaggatctgcgtccgatcgtgcgc
atcgtggatgccaagggcaacgacctgagcattccgggcaccgacctgccggcgcagtac
ctgctgccgccgcgctcgatcgtcaacctgcaggacggcgctgccgtcggcgtgggcgac
gtggttgccaagatcccgcaggaagcgtccaagacccgtgacatcaccggtggtctgccg
cgcgtggccgatctgttcgaagcccgcaagccgaaggatccggcgatcctggccgagcgt
tcgggcatcatcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaaggac
accgatggttccgagcacgaagagctgattccgaagtaccgtcaggtcatcgtgttcgaa
ggcgagcacgtgaccaagggcgaaaccatcgtggacggcgaaccgagcccgcaggacatc
ctgcgtctgctgggcgtcgagccgctggccgcctacctggtcaaggaaatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcacccgccagatg
ctgcgcaaggttgagatcaccgaccagggcagcagcaagttcctgaatggcgagcaggcc
gagcgccagcgcgtcatcgaggaaaatgcccgtctgtcggcccgcaacgagctgatcgcc
cgtttcgatccggtcctgctgggtatcaccaaggcctcgctggccaccgagtcgttcatt
tcggcggcgtcgttccaggaaaccacccgcgtgctgaccgaagcggccgttcgcggcacc
tcggacaacctgcgcggcctgaaggaaaacgtcatcgtcggccgtctgatcccggccggt
accggtctggcgtaccacgccaaccgtcgccgcaatgccacgggcctgaccgaatcggag
ctgcagaccctggttggcaccccggcggtggccgaggccccggccgtggaagcgtccacc
gacgccgagtcgaacgaagactga
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integrated database retrieval system
