KEGG   Stenotrophomonas oahuensis: PDM29_11960
Entry
PDM29_11960       CDS       T10110                                 
Symbol
dnaQ
Name
(GenBank) DNA polymerase III subunit epsilon
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
sou  Stenotrophomonas oahuensis
Pathway
sou03030  DNA replication
sou03430  Mismatch repair
sou03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sou00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PDM29_11960 (dnaQ)
   03430 Mismatch repair
    PDM29_11960 (dnaQ)
   03440 Homologous recombination
    PDM29_11960 (dnaQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sou03032]
    PDM29_11960 (dnaQ)
   03400 DNA repair and recombination proteins [BR:sou03400]
    PDM29_11960 (dnaQ)
Enzymes [BR:sou01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PDM29_11960 (dnaQ)
DNA replication proteins [BR:sou03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     PDM29_11960 (dnaQ)
DNA repair and recombination proteins [BR:sou03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     PDM29_11960 (dnaQ)
SSDB
Motif
Pfam: RNase_T RNase_H_2 EF-Ts_N DNA_pol_A_exo1
Other DBs
NCBI-ProteinID: WNH51086
UniProt: A0ABY9YJM3
LinkDB
Position
2702258..2702983
AA seq 241 aa
MRQIILDTETTGLEWRKGNRIVEIGCVELLERRPSGNNYHQYIKPDVEFEQGAQEVTGLT
LDFLADKPDFAQIADEFLAYIDGAELIIHNAAFDLGFLDYELSRLGDHYGTIADRCTVID
TLKMARERYPGQRNSLDALCKRLGVDNAHRQLHGGLLDAQILGDVYIALTSGQEEIGFGS
ADDAVSGGVQAMAIDTSRLLPRPRVVATASEQEAHESRLAKLRKKAGHAIWDGPKAEETA
A
NT seq 726 nt   +upstreamnt  +downstreamnt
atgcgtcagatcatcctcgacaccgaaaccaccggcctggaatggcgcaaaggcaaccgc
atcgtcgaaatcggctgtgtggaactgctcgagcgtcgccccagcggcaacaactaccac
cagtacatcaagcctgacgtcgagttcgaacagggcgcgcaggaagtcaccggcctgacc
ctggacttcctggccgacaagccggacttcgcgcagatcgccgacgagttcctggcctac
atcgacggggccgagctgatcatccacaacgccgcgtttgacctcggcttcctggattac
gagctgtcccggctgggtgaccactacggcaccatcgccgaccgttgcacggtcatcgat
acgctgaagatggcgcgcgagcgctatcccggccagcgcaactcactggacgcgttgtgc
aaacgactgggcgtggacaacgcgcatcgccagctgcacggcggtctgctggatgcccag
attctgggcgatgtgtatatcgccctgacctccggtcaggaagagatcggctttggcagc
gcggatgatgccgtcagtggcggcgtccaggcgatggccatcgacacctcgcgcctgctg
ccgcgcccgcgcgtggtcgccactgcgtccgagcaggaggcacacgagtcgcgcctggcc
aagctgcgcaagaaggccggccacgcgatctgggacggcccgaaggccgaagaaacggcg
gcctga

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