Stenotrophomonas oahuensis: PDM29_13675
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Entry
PDM29_13675 CDS
T10110
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
sou Stenotrophomonas oahuensis
Pathway
sou03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PDM29_13675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sou03000
]
PDM29_13675
03400 DNA repair and recombination proteins [BR:
sou03400
]
PDM29_13675
Enzymes [BR:
sou01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
PDM29_13675
Transcription factors [BR:
sou03000
]
Prokaryotic type
Helix-turn-helix
AraC family
PDM29_13675
DNA repair and recombination proteins [BR:
sou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PDM29_13675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
WNH51407
LinkDB
All DBs
Position
complement(3070330..3071805)
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AA seq
491 aa
AA seq
DB search
MDTALPLDYAACESARLARDARFDGVFYTAVRSTGIYCRPVCPAPPPKPRNVDYYPTAAA
AAAAGFRPCLRCRPELAPEAQDALHNETLQRALALIHDGYLQDAAVGELAARVGLSARQL
QRLFVARLGAAPAQIHATRRLLLAKQLLTETGLPVTDVAMAAGYNSLRRFNAAFLEGCGM
PPSAIRRQRGALDDGALTLRLGYRPPLDFPAMLAFLRRRCIPGIEQIGDDRYQRVIGPAE
RPSIITVTADPRRPELLLQLGQIDPRGIPGVVRRVRRIFDLDADLRMVHASFAQEPLLAR
GVAERPGLRVPGGWDGFEVAVRAVLGQQVSVAAAITLARRVVDRFGGVLEGMPEGLDREF
PTPAQLADAPLESIGLPRSRAATVRAVATAVAEGRLDFAAGQRLDTFIERCVALPGIGPW
TAHYMALRALGLPDAFPAGDLVLQQVLGEGTRLSERATEARSQAWRPWRAYAVLHLWHLA
TPTVTTSGDTK
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgccctgcccctggactacgccgcctgcgaaagcgcccgccttgcccgcgat
gcgcgcttcgacggtgtgttctacaccgctgtgcgcagcacgggcatctactgccgcccg
gtgtgtccggccccgccgccgaagccgcgcaacgtggattactaccccacggctgccgct
gcggccgccgccggattccgtccgtgcctgcgttgccgaccggagcttgccccggaggcg
caggacgcgctgcataacgagaccctgcagcgtgcattggcgctgattcacgacggctac
ctgcaggacgcggcggtgggcgagctggccgcgcgcgtggggttgagcgcccggcagttg
cagcgcctgttcgtcgcccggcttggcgcggccccggcacagatccatgccacccgccgc
ttgctgctggccaagcagctgctgaccgaaaccgggctgccggtgaccgacgtggccatg
gccgccggctacaacagcctgcgccgcttcaacgccgccttcctcgagggctgtggcatg
ccgccttccgcgatccgccgccagcgcggcgcactcgacgacggcgcgctgaccctgcgc
ctgggctaccgcccgccgctggacttcccggccatgctggcgttcctgcgccggcgttgc
attcccggcatcgagcagatcggcgacgaccgctaccagcgcgtgatcggccccgccgag
cgcccctcgatcatcacggtgacggctgacccccgccgccccgagctgctgctgcaactg
ggccagatcgatccgcgcgggattcccggggtggtacgccgggtacgccgcatcttcgac
ctcgatgctgacctgcgcatggtccatgcgagcttcgcgcaggaaccgttgctggcacgt
ggcgtggccgaacgccccggcctgcgtgtacccggcggatgggacggcttcgaagtcgca
gtgcgcgcagtgctcggccagcaggtcagcgtggcagccgcgatcaccctggcccggcgc
gtggtggaccgctttggcggcgtgctggaaggcatgccagaaggactggaccgcgaattt
cccacgcccgcgcagctggccgatgctccgctggaatcgattggcctgccgcgctcgcgt
gcggccaccgtgcgtgccgtcgccaccgcagtggcggaagggcggctggactttgctgcc
ggccagcgcctggacaccttcatcgagcgctgcgtcgccctgcccggcatcggcccctgg
accgcgcattacatggcgctgcgggcactgggcctgcccgatgcattcccggccggcgat
ctggtgctgcaacaggtgctgggtgaaggcacccgcctgagcgaacgcgctaccgaggcc
cgctcgcaggcctggcgaccgtggcgtgcgtatgccgtgctgcatctgtggcacctggcc
acgccgaccgtgaccacttcaggagacacaaaatga
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