Stenotrophomonas oahuensis: PDM29_13675
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Entry
PDM29_13675 CDS
T10110
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
sou Stenotrophomonas oahuensis
Pathway
sou03410
Base excision repair
Brite
Enzymes [BR:
sou01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
PDM29_13675
Transcription factors [BR:
sou03000
]
Prokaryotic type
Helix-turn-helix
AraC family
PDM29_13675
DNA repair and recombination proteins [BR:
sou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PDM29_13675
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WNH51407
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Position
complement(3070330..3071805)
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AA seq
491 aa
AA seq
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MDTALPLDYAACESARLARDARFDGVFYTAVRSTGIYCRPVCPAPPPKPRNVDYYPTAAA
AAAAGFRPCLRCRPELAPEAQDALHNETLQRALALIHDGYLQDAAVGELAARVGLSARQL
QRLFVARLGAAPAQIHATRRLLLAKQLLTETGLPVTDVAMAAGYNSLRRFNAAFLEGCGM
PPSAIRRQRGALDDGALTLRLGYRPPLDFPAMLAFLRRRCIPGIEQIGDDRYQRVIGPAE
RPSIITVTADPRRPELLLQLGQIDPRGIPGVVRRVRRIFDLDADLRMVHASFAQEPLLAR
GVAERPGLRVPGGWDGFEVAVRAVLGQQVSVAAAITLARRVVDRFGGVLEGMPEGLDREF
PTPAQLADAPLESIGLPRSRAATVRAVATAVAEGRLDFAAGQRLDTFIERCVALPGIGPW
TAHYMALRALGLPDAFPAGDLVLQQVLGEGTRLSERATEARSQAWRPWRAYAVLHLWHLA
TPTVTTSGDTK
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgccctgcccctggactacgccgcctgcgaaagcgcccgccttgcccgcgat
gcgcgcttcgacggtgtgttctacaccgctgtgcgcagcacgggcatctactgccgcccg
gtgtgtccggccccgccgccgaagccgcgcaacgtggattactaccccacggctgccgct
gcggccgccgccggattccgtccgtgcctgcgttgccgaccggagcttgccccggaggcg
caggacgcgctgcataacgagaccctgcagcgtgcattggcgctgattcacgacggctac
ctgcaggacgcggcggtgggcgagctggccgcgcgcgtggggttgagcgcccggcagttg
cagcgcctgttcgtcgcccggcttggcgcggccccggcacagatccatgccacccgccgc
ttgctgctggccaagcagctgctgaccgaaaccgggctgccggtgaccgacgtggccatg
gccgccggctacaacagcctgcgccgcttcaacgccgccttcctcgagggctgtggcatg
ccgccttccgcgatccgccgccagcgcggcgcactcgacgacggcgcgctgaccctgcgc
ctgggctaccgcccgccgctggacttcccggccatgctggcgttcctgcgccggcgttgc
attcccggcatcgagcagatcggcgacgaccgctaccagcgcgtgatcggccccgccgag
cgcccctcgatcatcacggtgacggctgacccccgccgccccgagctgctgctgcaactg
ggccagatcgatccgcgcgggattcccggggtggtacgccgggtacgccgcatcttcgac
ctcgatgctgacctgcgcatggtccatgcgagcttcgcgcaggaaccgttgctggcacgt
ggcgtggccgaacgccccggcctgcgtgtacccggcggatgggacggcttcgaagtcgca
gtgcgcgcagtgctcggccagcaggtcagcgtggcagccgcgatcaccctggcccggcgc
gtggtggaccgctttggcggcgtgctggaaggcatgccagaaggactggaccgcgaattt
cccacgcccgcgcagctggccgatgctccgctggaatcgattggcctgccgcgctcgcgt
gcggccaccgtgcgtgccgtcgccaccgcagtggcggaagggcggctggactttgctgcc
ggccagcgcctggacaccttcatcgagcgctgcgtcgccctgcccggcatcggcccctgg
accgcgcattacatggcgctgcgggcactgggcctgcccgatgcattcccggccggcgat
ctggtgctgcaacaggtgctgggtgaaggcacccgcctgagcgaacgcgctaccgaggcc
cgctcgcaggcctggcgaccgtggcgtgcgtatgccgtgctgcatctgtggcacctggcc
acgccgaccgtgaccacttcaggagacacaaaatga
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