Stenotrophomonas oahuensis: PDM29_13825
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Entry
PDM29_13825 CDS
T10110
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sou Stenotrophomonas oahuensis
Pathway
sou03030
DNA replication
sou03430
Mismatch repair
sou03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PDM29_13825 (dnaE)
03430 Mismatch repair
PDM29_13825 (dnaE)
03440 Homologous recombination
PDM29_13825 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sou03032
]
PDM29_13825 (dnaE)
03400 DNA repair and recombination proteins [BR:
sou03400
]
PDM29_13825 (dnaE)
Enzymes [BR:
sou01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PDM29_13825 (dnaE)
DNA replication proteins [BR:
sou03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PDM29_13825 (dnaE)
DNA repair and recombination proteins [BR:
sou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PDM29_13825 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
SBSN_GxHH_rpt
Motif
Other DBs
NCBI-ProteinID:
WNH51434
UniProt:
A0ABY9YMH8
LinkDB
All DBs
Position
complement(3103487..3107068)
Genome browser
AA seq
1193 aa
AA seq
DB search
MSTSRFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRAVELQLPALAVTDLNN
LFALVKFYKAAETVGIKPIAGADVMIAEEGMTPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAVHPDWLKAGCHNLFALAGRESLAGRLAGEGRHDLAEQQLADWQRVFGDGLHL
ELTRTGREGEEAFNQFALMAAGQRGLPVVASNDVRFLRPDDFSAHEARVCISSGRVLDDP
KRPRDYSEQQYLKSPEEMCALFADIPDAIDNTLALAERCNVEMRLGTYFLPNYPVPDNET
LDSWICSESRKGLEARLEKNPLAEGKTREDYFERLEFELSTIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALQITDLDPIPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGFPYGLVDGVSKLIPNILGIS
LKDAMGEGKDSEMASPELIQRYQSEDEVRDLIDLARQLEDLTRNAGKHAGGVVIAPEPLA
EFCPLFAEHDEGGRGRNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINKRHARA
GIPPVDITALPLDDAPTYKDIFANGNTGAVFQFESSGMRRLLKDARPDRFEDLIALVSLY
RPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQIVGGYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKGGVDGPKADEIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLAEVRNLGLTVLPPKVNESAYMFEA
SSADTIQYGLGAIKGVGQGACEAVVDERIAKGRYESLLDFCMRIESGKLNRRTLEAMINC
GALDGLGKNRASLMLQLPEVLKATDQMSREKASGQNSLFGAPDPVSTAMQLDLPEAKEWA
LAQLLEGERETLGFYLSGHPFDPWAEDVKELVGTDLGMLEKLIPPARPSKDGEKRAWRQE
TPVILAGLVVGVRRKGESQIFMQLEDGRGRVECSAFSDGLAEFGHLMTKDRILVVKGGLR
EDEFNGGYALRIRQCWDYEEICANYATRLSLRLDLRQGDPVWSRVNALLDRHRPGRTPLR
LDLLLGSPQGPVAGMLDVGGETAVRVDSQLVDALRADPAVRTLKVRYSPPWAN
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttcccgtttcgtacatcttcacgtccacaccgagttttcgctggcggattcg
actatccgtgtcccggcgaaaccggatcaggctgacccgaaaaaggccaaacaggccaat
ctgctcagccgtgccgtcgaactgcagttgccggccctggccgtcaccgacctgaacaac
ctgttcgcgctggtcaagttctacaaggccgccgagaccgtgggcatcaagcccattgcc
ggtgccgacgtgatgattgccgaagaaggcatgacgccgtggcggatgaccctgctgtgt
cgcgaccgcgaaggctatctcagcctgtcacgcctgctcacccgcgcctggatggaaggc
catcggccggaaggcggcgtggccgtgcatccggactggctgaaggccggctgccataac
ctgtttgcgctggccgggcgcgagagcctggccggtcgattggccggtgaaggccggcat
gaccttgccgaacagcagctcgccgactggcagcgcgtgtttggcgatggcctgcacctg
gaactgacccgcaccgggcgcgagggagaagaagccttcaaccagttcgcgctgatggcc
gccggccagcgtggcctgccggtggtggccagcaacgacgtgcgcttcctgcgcccggac
gacttcagcgcgcatgaggcgcgcgtgtgcatttcctccggccgcgtgctggatgacccc
aagcgcccgcgcgactacagcgaacagcagtacctgaagtcgcccgaggaaatgtgcgcg
ctgttcgccgacattcccgatgccatcgacaacaccctggcgctggctgaacgctgcaac
gtggaaatgcggctgggcacctacttcctgcccaactacccggtgcccgacaacgagacc
ctggacagctggatctgcagcgagtcgcgcaagggtctggaagcgcgcctggaaaagaac
ccgctggccgaaggcaaaacccgcgaagactacttcgagcggctggaattcgagctgtcg
accatcatcaagatgggcttcccgggctacttcctgatcgtggccgacttcatccagtgg
ggcaagaaccagggcattccgattggtccgggtcgtggttccggtgccggctcgctggtg
gcgtgggcactgcagatcaccgatcttgatccgattccgtacaacctgctgttcgagcgg
ttcctcaaccccgagcgcgtgtcgatgcccgacttcgacatcgacttctgcatggaccgc
cgcgacgaggtcatcgactacgtcgcgcgcaagtacgggcgtgagcgcgtcagccagatc
atcacctacggcaccatggccgccaaggcggtggtgcgcgactccggtcgcgtgctcggc
ttcccgtatggcctggtcgatggcgtttccaagctgattcccaacatcctgggtatttcg
ctcaaggacgcgatgggcgaaggcaaggattcggaaatggcctcgccggagttgatccag
cgctaccagtccgaagacgaagtgcgcgacctgatcgacctggcgcggcagctggaagat
ctcacccgcaacgccggcaagcacgccggtggcgtggtgatcgcgccggagccgctggcc
gagttctgcccgctgttcgccgaacacgacgaaggcggtcgtggccgcaacccggtgacc
cagttcgacaagaacgacgtcgaagaagtcggcctggtgaagttcgacttcctcggcctg
cgcacgctgaccatcattgactgggcagtgaaggcgatcaacaaacggcatgcgcgcgcc
ggcattccgccggtggacatcaccgccctgccgctcgacgacgcgcccacctacaaggac
atcttcgccaacggcaacaccggtgcggtgttccagtttgaatcctcgggcatgcgccgt
ctgctgaaggacgcgcgccccgaccgtttcgaagatctgatcgcgctggtgtcgctgtac
cgccccggcccgatggacctgattccctccttcaacgcgcgtaagcacggccaggaagag
atcatttatcccgatccgcgcaccgaagccatcctcaaggacacctacggcatcatggtg
taccaggagcaggtgatgcagatggcgcagatcgtcggcggctactctctgggcggcgcg
gatctgctgcgccgagcgatgggcaagaaggtgccggcggaaatggccaagcaccgtgag
atcttccgcgagggtgcggccaagggcggcgtcgacggtcccaaggccgacgaaatcttc
gacctgatggaaaagttcgccggctacggtttcaacaagtcgcacgccgccgcgtacgca
ctggtcagttaccagaccgcctggctcaagcgtcactaccctgccgagttcatggccgcg
acgctgtcgtcggacatggacaacaccgacaaggtggtcggcttcctggctgaagtgcgc
aacctcggcctgaccgtgctgccgccgaaggtcaacgaatcggcgtacatgttcgaggcc
tccagtgccgacaccatccagtacggcctgggtgcgatcaagggcgtgggccagggcgca
tgcgaagcggtggtcgacgagcgcatcgccaagggacgctacgaatcgctgctggatttc
tgcatgcgcatcgagtccggcaagctcaatcgccgcacgctagaggcgatgatcaactgc
ggcgcgctggatggcctgggcaagaaccgcgcctcgctgatgctgcagttgccggaagtg
ctcaaggccaccgaccagatgtcgcgcgagaaggcctctggccagaactcgctgttcggc
gcgccggacccggtcagcaccgcgatgcagctggacctgcccgaagcgaaggaatgggcg
ctggcgcagctgctggaaggcgagcgtgaaacgctgggcttctacctcagcggtcacccc
ttcgacccgtgggcggaggacgtcaaggaactggtcggcaccgacctgggcatgctggaa
aaactcattcccccggcccgccccagcaaggacggcgaaaagcgcgcctggcgccaggaa
accccggtgatcctggccgggctggtggtcggcgtgcgtcgcaagggtgaaagccagatc
ttcatgcagctggaagatggccgtggccgggtcgagtgcagcgccttctccgacggcttg
gccgaattcggccacctgatgaccaaggaccgcatcctggtggtcaagggcggcctgcgc
gaggacgagttcaacggcggctacgcgctgcgcatccgccagtgctgggattacgaggaa
atctgcgccaactacgcgacccggctgtcgctacgcctggacctgcgccagggcgacccg
gtctggagccgcgtgaatgcgctgctggaccgccatcgccccggccgcacgcccctgcgc
ctggacctgctgctgggctcgccgcagggcccggtggccggcatgctcgacgtgggcggc
gagaccgccgtacgcgtggacagccagctggtggacgcgctgcgggccgatccggccgtg
cgcacgttgaaggtccgctacagcccgccctgggcgaattga
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