Stenotrophomonas oahuensis: PDM29_17530
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Entry
PDM29_17530 CDS
T10110
Name
(GenBank) putative Ig domain-containing protein
Organism
sou Stenotrophomonas oahuensis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
He_PIG
Autotransporter
Calx-beta
Big_9
SprB
Cadherin_5
Y_Y_Y
DUF7620
Motif
Other DBs
NCBI-ProteinID:
WNH52119
LinkDB
All DBs
Position
3933840..3939143
Genome browser
AA seq
1767 aa
AA seq
DB search
MAYLWGRARFARLFAISMFLFCAALIWPGAAWAAHTSPVCAEKFATVTNGGSVTVDVTDC
GQGAQNFGDGPVDGPALPQNGTANLRIVGNSWFVDYSHSGNNTTSDAFEFTDGEASGNGG
AVRVNITVTPANTAIVVAPSSLPTLTSGVSFTQTLSATGGTAPYSYAVVGGALPPGITLT
GDTLSGTPTQRGAYTFTVRATDNASDTVDKSYSGTVQNPNLTLTPASASAIQGVPFTQTL
STSGGVGTISYALETGSLPAGITISPAGVVSGTTSAATGNYPVQIRVTDGSTGPGSYFEV
ENFTLTVSPAPSVSIAVSPASVSEDGATNLVFTVTRSLNLSSPTVVNLTTGGTATSGVDY
TGGVSTVTIPSGATTATVVIDPVADTVVEANETVILTVAAGSGYTVGAPTSATGTILNDD
VPRASIAVSPASVNEDSGTPLVYTVTLDQPALGATSINFNVGGSATSGSDYVAVSSPLVI
AAGATTGTITVTPTTDTTVEGNETVVLTLAAGAGYVVGTPSSATGTILDDDQPTLSVIDV
TANEGNSGTTTFTFILSLSAPAGPGGVTLDIATADGTAVAGSDYIARALTGQVIPAGSSG
TSLSVQVNGDTLNEPNETFFVNVSNVSGATVAKAQGVGTIVNDDPLPSLSINDVSVTEGN
AGTTSALLTVSLSAASGQMVTVNYATANGSAVAPTDYIGAVGTLTFAPGVTTGIITIPVN
GDTTPEANETFTVNLSGATNATVSDASGTVTIVNDDQPVTVAPSTLPAPTVGVAYSQTIA
ATGGSGSYTFSVSAGALPNGLTLSSGGVLSGTPTASGSFAFTLRATDTSVAPGPYMGDQP
YVMTLGAPTLQLPAGAMPAATRTQPYNASVGPASGGTGPYSYAFASGSLPPGLSMNTSTG
DVSGAPTALGTFNFIITATDSTTGTGAPYMVSSSRSITVVDSVPVAGNVNATFVYGAPAT
PVTLALSGGAATSVAVDTAPSHGTATVTGPTTISYQPAAGFAGADSFTYIASNASGDSAP
ATVSITVNNPSITVSANGVLSAVAGTTYSQTFTWDGGAAPYSGYQVNNLPAGVSVSSSAA
NSVTVSGTPTQAGSFTLQAVATDSSTGNGPFTVGQTFTLTVTSPTLVVTPPTLAPATAGT
AYQQVVTTAGGVAPYSYVLSGALPSGVSFDGSSGTFSGTPTQAGGFALTVTTTDSTTGTP
GSVVQNYTLQVASPALSLTPAAGALPATTAGSTYQVAFAARNGVAPYTFAMSAGSLPAGL
VLDAASGRLAGTPTAVGNFSFSITATDSTTGTPGTVTQAYTVNVAAPVLTLTPETLPAGL
FANAYQQQLSTSGGTAPYSYAVTTGALPGGLTLSSAGAVSGAPTAAGAFAFTVTATDALG
FTGTRDYTVEVTQRPDPTRDPEVRGLASAQADAARRFATSQIENIQQRMQRLHGASRNNG
FSNNLSLAYGAQRCEPAVGSLPGADCDAQRRQPFDREPGLDAPASVDSASQAPLGLWVGG
TVRTGRSNGRGSDGGDFNTDGVTVGSDLQVTPALAVGAGLGYGRDRTDVGENGSRSDGEA
FSMMLYASYSPGERLFVDALLGYQLLDYDLRRYVTSDGSFAHARRDGSQWFGSLSFGADL
LRGNWLVTPYARIDASSGTLDPYAEDGSALFALRYGDQDVESTTGNGGVRMEMRNTTVWG
AWTPQLRVEYQHDFKGNGTATMHYADLVGVPFYRTSVDGFDRNRWMIGAGLMFDFRRNWG
LRVDYRGLIGSGEDRDHGVQISLDKQL
NT seq
5304 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacctttggggccgcgcgcgcttcgcgcgactgttcgcaatttcgatgttcctg
ttctgtgccgcacttatctggccgggtgccgcgtgggcggcgcacacctcgccggtgtgt
gcggagaagttcgccacggtcaccaacggcggctcggtcaccgtggacgtgaccgattgc
ggccagggcgcgcagaacttcggcgatggcccggtagatggtcctgccctcccccagaac
ggcaccgcgaacctgcggatcgtgggcaacagctggtttgtcgactacagccacagcggc
aacaacactacatccgacgccttcgagttcactgatggcgaggccagcggcaatggcggc
gcggtgcgggtgaacatcaccgtaactccggccaacacggcgattgtggtggcaccgtct
tcgctgccgaccctgacctctggcgtctccttcacgcagaccctcagtgccacgggcggt
acggcaccgtactcgtatgccgtggttggcggcgcgctgccgccgggcatcaccctgacc
ggggacacgctcagcggtacgcccacccagcgtggtgcatacaccttcaccgtgcgcgcc
accgacaacgcgtctgacacggtcgacaagtcatacagcggcaccgtgcagaatcccaat
ctcaccctcacgccggcctcggcctcggccatccagggcgtgccgttcacgcagacgctg
agcaccagcggcggcgtgggcaccatcagctacgccctggaaacgggcagcttgccggct
gggataaccatcagccctgccggcgtggtcagcggcaccacatcggcagcgaccggcaac
tacccggtccagatccgcgtgaccgacggcagcaccggtccgggaagctacttcgaggtg
gagaatttcaccctcacggtgagccctgcgcccagcgtcagcattgccgtgtcgccggca
agcgtctccgaggacggggcgaccaacctggtcttcacggtcacccgcagcctcaacctg
agctcgcctacggtggtcaacctgaccactggcggtaccgcaaccagcggcgtggactac
accggtggcgtatccaccgtgaccattccttccggtgcaaccaccgcaaccgtggtcatc
gaccctgtcgcggataccgttgtggaggccaacgaaacggtcatcctcaccgttgccgcc
ggcagcggctacaccgtgggtgccccgaccagcgccaccggtacgatcctcaatgacgac
gtgcccagggcatcgattgccgtgtcgccggcctcggtcaatgaggacagcggcacgccg
ctggtctacaccgtcaccctggaccagcccgcccttggcgcaacctcgatcaacttcaac
gtaggcggcagtgctaccagcgggtccgactatgtggccgtcagttcgccgctggtcatt
gccgctggtgccaccaccggcaccatcacggtcactcccaccaccgacaccacggtggaa
ggcaacgaaaccgttgtgctcaccctggcggcgggcgccggctacgtcgtcggcacgccg
tcttcggcgaccggcacaatcctggatgacgaccagccgacgttgagcgtcattgacgtc
accgccaacgaaggcaacagcggcacaaccacatttactttcattctgtcgctcagcgcg
cccgctggcccaggtggcgtaactcttgacattgccaccgctgatggcaccgctgtcgct
ggcagcgactacattgccagggcgctgaccgggcaggtcatcccggcgggtagcagtggc
acaagccttagtgtccaggtcaacggcgacaccttgaacgaaccgaatgaaaccttcttc
gtcaatgtcagcaacgtcagcggggcgaccgttgccaaggcgcagggcgtgggcaccatc
gtcaacgatgacccgctgccgtcgctgtcgatcaacgacgtctcggtgaccgagggcaat
gccgggaccacttcagctttgttgaccgtgtcgttgtccgccgccagcgggcagatggtc
accgtcaactacgccaccgccaatggcagcgccgttgcgcctactgactacatcggagcc
gtgggcaccctgacctttgcgccaggtgtcaccaccggcatcatcacgattccggtcaat
ggcgataccacgccggaggccaacgagactttcaccgtcaacctgtccggggccaccaat
gccacggtgagcgatgcgagcggtacggtcaccatcgtcaacgatgaccagccggtgacc
gtggcaccgtccacactgccggcaccgacggtgggcgtggcgtacagccagacgatcgcc
gccacgggtggcagtggcagctacaccttctcggtgtcagccggcgcgttgccgaacggc
ttgacgctcagctcgggcggcgtgctgagcggcacgcccaccgcgagcggctcgtttgcc
ttcaccctcagagccaccgataccagtgtggcaccggggccttatatgggtgatcagcct
tatgtgatgaccttgggggcacccacgctgcagttgccagcgggcgcgatgcctgctgca
acacggacgcagccctataacgcctcggtcggtcctgccagtggcggcaccgggccgtac
agctacgcgttcgccagtggttccctgccgccgggtttgagcatgaacacctcgaccggc
gacgtttccggtgcgccgaccgctctgggcaccttcaacttcatcatcaccgctacggac
agcaccaccggtaccggcgcgccttacatggtcagctcgtcgcgatcgatcaccgttgtc
gacagcgtgccggtggctggcaatgtcaacgcgacctttgtttacggtgcacccgccacg
ccggtgacactggcactttcaggcggtgcagccacctctgttgcggtcgataccgcgcct
tcgcacggcaccgccacagtgaccgggccgacgaccatcagctatcagccggcggcgggc
tttgctggcgctgacagcttcacctatatcgccagcaacgccagcggcgattccgcgccg
gccacggtgagcatcaccgtcaacaatccgtccatcacggtcagcgccaatggcgtgctt
tcagcggtggcaggcacgacatacagccagaccttcacctgggacggcggtgccgcaccg
tacagcggttatcaggtgaacaacctgcccgctggcgtgtcggtcagcagcagcgcggcc
aacagcgtgacggtcagtggtacgcccacgcaggccggcagcttcaccctgcaggctgtg
gccaccgacagcagcaccggcaacgggccgttcaccgtgggccagacgttcacgctgact
gtcaccagcccgaccctggtggtgaccccgccgacgcttgcaccggcaacagccggaacg
gcctaccagcaggtggtcaccaccgcaggcggcgtggcgccctacagctacgtgctgagc
ggcgcgctgcccagcggcgtgagcttcgatggcagcagcggcacgttctctggcacgccg
acgcaggcaggcggcttcgcgttgacggtgactaccaccgacagcaccaccggtaccccg
ggcagcgtggttcagaactacacgctgcaggtggccagcccggcactgagcctgaccccg
gctgcaggtgctcttccggccaccaccgccggcagcacttaccaggtggcttttgctgcc
cgtaacggcgtggcaccgtacaccttcgcgatgagtgccggatcgctgcctgctggattg
gtgctggatgctgccagcggacgtctggccggcacgccgaccgcagtgggcaacttcagc
ttcagcattacggccacggacagcaccactggcactccgggcaccgtgacccaggcgtac
acggtgaatgtggccgccccggtgctgacgctgaccccggaaaccctgccggcaggtctg
ttcgccaatgcctatcagcagcagctgtccaccagcggcggcacggcaccttacagctat
gcggtcaccaccggtgctctgcccggcggcctgacgctgtcctctgcgggtgcggtttcc
ggcgcgccgaccgcagctggcgcgtttgccttcaccgtcaccgcgaccgacgcacttggc
ttcaccggcacgcgcgattacaccgtggaagtcacccagcgcccggacccgacccgtgat
ccggaagttcgcgggctggcctcggcgcaggccgatgcggcccgccgcttcgctacgtcg
cagatcgagaacatccagcagcgcatgcagcgcctgcacggtgccagccgcaacaacggc
ttcagcaacaacctgagcctggcgtacggtgcgcagcgctgtgaacctgcagtgggcagc
ctgcccggtgccgactgtgatgcacagcggcgccagccgttcgaccgtgagcccggcctg
gacgcgccggcttcagtggacagtgcttcgcaggcaccgctgggtctgtgggtgggcggt
accgtacgcaccggtcgcagcaacgggcgtggcagtgacggcggtgatttcaacaccgac
ggcgtcaccgtgggcagcgacctgcaggtaacccctgccctcgcggtgggtgccggcctt
ggctacggccgcgatcgcaccgacgtgggcgagaacggcagccgcagcgatggcgaggcg
ttctccatgatgctgtacgccagctacagcccgggcgagcgtctgttcgtggacgcgctg
ctgggctatcagctgctggactacgacctgcgccgttacgtgaccagcgatggcagcttc
gcgcatgctcgtcgcgacggcagccagtggttcggttcgctgtccttcggtgcggatctg
ttgcgtggcaactggctggtgacgccctacgcgcgcatcgacgcatcaagcggcacgctg
gacccgtacgccgaagatggcagcgctctgtttgccctgcgctacggtgaccaggatgtg
gaaagcaccaccggcaacggcggcgtccgcatggaaatgcgcaacaccacggtgtggggc
gcgtggaccccgcagttgcgcgtggaataccagcacgacttcaagggcaacggtacggcg
acgatgcattacgccgacctggtgggcgtgccgttctaccgcacctcggtggatggcttc
gaccgcaaccgctggatgatcggtgccgggctgatgttcgatttccggcgcaactggggt
ctgcgggtggactatcgcggcctgattggcagcggtgaagaccgcgaccatggggtgcag
atcagcctggacaagcagttgtag
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