Stenotrophomonas oahuensis: PDM29_20475
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Entry
PDM29_20475 CDS
T10110
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sou Stenotrophomonas oahuensis
Pathway
sou03018
RNA degradation
Brite
Enzymes [BR:
sou01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PDM29_20475 (rne)
Messenger RNA biogenesis [BR:
sou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PDM29_20475 (rne)
Ribosome biogenesis [BR:
sou03009
]
Prokaryotic type
rRNA processing factors
PDM29_20475 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WNH52664
LinkDB
All DBs
Position
4581639..4584815
Genome browser
AA seq
1058 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GGDRHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPTAGGVSRRIEGEDRAALKDALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQVWKAIAEAALTKPAPFLIYQESRLIVRALRDYLRADVGEILVDTEELYETAR
EFMQQVMPQTLRKLKHYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAI
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMSSNKHQREVENR
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIICPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHDAPIVIVADEQLHTPH
YEVTRLRENELGEESGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTNVKHSAPAPVREV
AEVEATPAPAPAAPAPVAAPATGGVVGWFKRIFGGEPAPAAAPAAPARPAQDGNRNGRNK
DRNGKDRRRDERGGNGQAQGQGRNKDRRDERGDRSGKGERRDDRRQDQAANANAGQAQQG
QGKPRNEQQPKPRNEQQPQQQQPKLKQPQKQNQNGQKPQQNDADKPARQPQAEAPKPANI
GTPVADAAVLSAAAVATAAATTPASTVPAPTTPAPVPTPAAEDTATTVVEGAAQGDAPAS
TEEGTGEGASRRRRGRRGGRRRRRGNGEQAAGAEGQLDDNGLDDGDDDQDGDQDGVQDSA
PEAAPRAAGNGQSQPEFDFDDEPGSAPAAAPAPAAQAPRPAAPVAAVAAAAPHAVVSSPV
VTAGHAETKADAAPSYNDPVPFVESPAPVQAPVVAEAPKPVEAPVVVEAPKPVETPVAVE
APKPVEAPVVAETPKPVEASQPTEAARPVQANLLDSVDATTNPGSDTPRVSAPVAAEPAA
TDAAAQAAVAEAREDIPTDELAQAEAAAKVDEDKADKA
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaatgccacgcaggctgaagagctgcgggtagccatcgtggat
ggccagacgctgtacgacatcgacatcgaacagccgtccaaggaacagaagaagtcgaac
atctacaagggccgcatcacccgcctggagccctcgctggaagcagcgtttgttgaatac
ggcggcgaccgtcacggcttcctgccgctgaaggaaatctcccgcgattacttccaggcc
ggggtcgaccacaacaaggcgaccatccgcgaactgctgcgcgaaggccaggaagtcgtt
gtccaggtggacaaggaagagcgtggcaacaagggcgctgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgccgaactcgcccaccgccggtggcgtgtcgcgt
cgcatcgagggcgaagaccgcgccgcgctgaaggacgcgctggacaagctgaacatcccc
gacgacatgggcgtgatcatccgcaccgccggtgtcggccgtgatgccgaagagctgcag
tgggacctggactacctgctgcaggtttggaaggccatcgccgaagcggcgctgaccaag
ccagcaccgttcctgatctaccaggaatcgcgcctgatcgtgcgcgccctgcgtgactac
ctgcgcgccgatgtcggcgagatcctggtcgataccgaagagctgtacgaaaccgcgcgc
gaattcatgcagcaggtgatgccgcagaccctgcgcaagctcaagcattacaaggacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaaggcgcgtatgaacgcaat
gtccgcctgccgtccggcggctcgatcgtggtcgaccagaccgaagcgctgaccgccatc
gacgtcaactcctcgcgcgccaccaagggcagcgacatcgaagacaccgccttccagacc
aacctggaagcggccgaggaagtcgcccgccagctgcgcctgcgcgacctgggcggcctg
gtggtgatcgacttcatcgacatgtcgtcgaacaagcaccagcgcgaagtggaaaaccgc
ctgcagaacgcgctcaagtacgaccgcgcgcgcgttcagctgggccgcatctcgcgcttc
ggcctgatggaaatgagccgccagcgcctgcgcccgagcctgggcgaatccagccagatc
atctgcccgcgctgtgacggccatggccgtatgcgcagcgtggagtcgctgtcgctgtcg
atcatccgcgtggccgaagaacacgccatgaaggaaaacaccgggcaggtgctggtccag
gccccggtggagatcgccaactacctgctcaacgagaagcgcagcgcgctgcgtgaaatc
gagcagcgccacgatgcgcccatcgtgatcgtcgccgacgagcagttgcacaccccgcat
tacgaagtgacccgcctgcgtgaaaacgagctgggcgaagaaagcggcaagcccagctac
cagcgcggtaccccgcgcaagctgccggtgcatgcgctgaccaaggcccagctgaacatc
ccggccgccccggccgtgaccaacgtcaaacacagcgccccggctccggtccgcgaagtg
gccgaagtggaagccacgccggctccggctccggccgccccggcacccgtggccgcgccg
gccaccggcggcgtggttggctggttcaagcgcatctttggtggtgaaccggctccggcc
gccgctccggctgcaccggcacgcccggcccaggacggcaaccgtaacggtcgcaacaag
gaccgcaacggcaaggaccgtcgccgcgacgaacgcggtggcaacggccaggcccagggc
cagggtcgcaacaaggaccgtcgcgatgagcgcggcgaccgtagcggcaagggcgagcgt
cgcgacgaccgtcgtcaggaccaggcggccaatgccaacgccggccaggcccagcagggc
cagggcaagccgcgcaatgagcagcagccaaagccgcgcaacgaacagcagccgcagcag
caacagccgaagctgaagcagccgcagaagcagaaccagaacggccagaagccgcagcag
aacgacgctgacaagccggcccgtcagccgcaggccgaagcgccgaagccggccaacatc
ggcacgccggtggcggatgcagcggtgttgtcggccgccgctgtcgcgactgccgctgct
acgaccccggcttccaccgtgcccgccccgaccaccccggctccggtcccgaccccggcc
gcggaagacaccgcgaccaccgtggtggaaggcgctgcgcagggcgatgccccggcctcg
accgaggaaggcactggcgaaggcgcatcgcgccgtcgtcgtggccgtcgcggtggtcgc
cgtcgtcgtcgtggcaatggcgagcaggctgccggtgccgaaggccagctggatgacaac
gggctggacgacggtgacgacgaccaggacggtgaccaggacggcgtgcaggattcggct
ccggaagcagcaccccgcgccgccggcaacggtcagtcgcagccggagttcgacttcgat
gacgaaccgggcagcgctccggccgcagctccggctccggctgcccaggctccgcgcccg
gcggcaccggtggcagcggttgccgctgctgccccgcacgctgtggtcagcagcccggtg
gtgaccgccggtcacgccgagaccaaggcagatgccgcgccgtcgtacaacgacccggtg
ccgttcgtggaaagcccggccccggtgcaggcaccggttgtggccgaagcgccgaagccg
gtggaagcgccggttgtggtggaggcaccgaagccggtggaaacgccggtcgctgtggaa
gccccgaagccggttgaggctccggtcgtcgccgaaacgccgaagccggtggaagcgtcg
cagccgaccgaagccgctcgcccggtccaggccaacctgctggactcggtggacgcaacg
acgaaccccggtagtgacacgccacgcgtgtctgctccggtcgccgccgaaccggccgca
accgacgccgccgcccaggccgcagtagccgaagcccgcgaggacatcccgaccgatgaa
cttgctcaggcggaagccgctgccaaggtggacgaggacaaggctgacaaggcctga
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