Streptomyces olivoreticuli: QZH56_20100
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Entry
QZH56_20100 CDS
T09517
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sov
Streptomyces olivoreticuli
Pathway
sov03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sov00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QZH56_20100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sov03021
]
QZH56_20100
03400 DNA repair and recombination proteins [BR:
sov03400
]
QZH56_20100
Enzymes [BR:
sov01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QZH56_20100
Transcription machinery [BR:
sov03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QZH56_20100
DNA repair and recombination proteins [BR:
sov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QZH56_20100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WKK21169
LinkDB
All DBs
Position
4556426..4560325
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRTWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDEERRTRDLPSLEAHVSVERQQIEQRRDADLEARAKKLEAD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFMGAMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTRNSPSGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEERKVIGE
GRSFGSVAEAIMAFDARELSLQAKVDIRFPIGTVPPRGWTPPVQEEGEPEWQQGDSFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFHWAT
RSGVTVAISDVVVPEAKKEIVKGYEAQDEKVQKQYERGLITKDERTQELIAIWTKATNEV
AEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLQIAAKG
ADGVLRKADDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDQLVAHGVETVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKIVVTPDDGSEETAFGISKRARL
LVSEGEHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSRFEGENRRVVTEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggcctggcgaccgcggacgacatc
cgaacctggtcccacggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
cccgaaaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcacgcgcgccaaggtgcgccgcgagcggatgggccacatcgagctcgccgctccc
gtcacccacatctggtacttcaagggcgtcccgtcgcgcctgggctacctgctcgacctc
gccccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcacgtgggtggac
gaggagcgccgtacgcgcgacctgccctcgctggaggcccatgtctccgtcgagcgtcag
cagatcgagcagcgccgcgatgccgacctggaggcccgcgccaagaagctcgaggccgac
ctggccgagctcgaggccgagggtgccaaggccgatgtgcgccgcaaggtgcgcgagggc
gccgagcgtgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgcctcgac
gaggtgtggagccgcttcaagaacctcaaggtccaggacctcgagggtgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacctacttcatgggtgcgatgggcgccgcggcg
ctgcagaagcgcctggagtccttcgacctcgacgaggaggccgagcgcctccgcgagatc
atccggaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gccttcctgcagacgcgcaacagccccagcggcatggtgctcgactgcatccccgtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgggtgatcaaccgcaacaaccgcctcaagcgtctccttgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgcccggtcaccggtcccggtaaccgcccgctgaag
tccctcagcgacatgctgaagggcaagcagggtcgattccgtcagaacctgctcggcaag
cgagtcgactactcggcccgttccgtcatcgtcgtcggtccgcagctgaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgc
accgtcgtgtacgacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtccggtcaccatgccgacccaggac
atggtgcttggcctgttcttcctcaccaccgacgaggaggagcgcaaggtcatcggcgag
ggccggtccttcggctcggtcgccgaggcgatcatggcgttcgacgcccgcgagctctcg
ctccaggcgaaggtcgacatccgcttcccgatcggcaccgtcccgccgcgtggctggacc
ccgccggtccaggaggagggcgagccggagtggcagcagggggacagcttccgcctgcgc
accacgctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgagatcgtcaacgacctggccgagcgctacccc
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggtttccactgggcgacc
cgttccggtgtcaccgtggccatctccgacgtcgtcgttcccgaggcgaagaaggagatc
gtcaagggctacgaggcgcaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaacgaggtt
gccgaggcgatgaacgcgaacttccccaagacgaaccccatcttcatgatggttgactcg
ggtgcccgaggaaacatgatgcagatgcgtcagatcgccggtatgcgtggtctggtgtcg
aacgcgaagaacgagaccatcccgcgacccatcaaggcgtcgttccgtgagggtctgtcc
gtgctggagtacttcatctccacccacggtgcccgtaagggtctcgcggacaccgccctg
cgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtgatc
atccgcgaggaggactgcggcaccgagcgcggcctcaagctgcagatcgcggccaagggt
gccgacggcgtgctccgcaaggcggacgacgtcgagaccagcgtctacgcccgcatgctg
gccgaggacgtcgtcgtcgacggcaaggtcatcgcgccggccaacgtcgacctgggcgat
gtcctcatcgaccagctcgtcgcccacggcgtcgagacggtcaagacccgctcggtcctc
acctgcgagtccgcggtcggcacctgtgccttctgctacggccgctcgctggccaccggc
aagctggtcgacatcggtgaggccgtcggcatcatcgcggcccagtccatcggtgagccg
ggtacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccccgtgtcgtcgagctcttcgaagcccgtacgcccaagggtgtcgccccg
atctcggaggcggccggccgcgtccgcatcgaggagaccgagaagaccaagaagatcgtc
gtcactccggacgacggctccgaggagaccgccttcggcatctccaagcgtgcccgtctg
ctggtcagcgagggtgagcacgtcgaggtgggccagaagctcaccgtgggtgccaccaac
ccgcacgacgttctgcgcatcctgggtcagcgcgccgtccaggtccacctggtcggcgag
gtccagaaggtctacaactcgcagggtgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgcgtgacgatcatcgagtccggcgacgcggagctgctgccg
ggcgagctcgtggagcgctcgcgcttcgagggcgagaaccgtcgtgtggtcaccgagggc
ggtcaccccgcctccggccgtccgcagctgatgggtatcaccaaggcctcgctggcgacg
gagtcgtggctgtccgcggcctccttccaggagacgaccagggtcctgacggacgcggcg
atcaacgccaagtccgactccctgatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggcctgtcccgttaccgcaacatccgggtggagcccaccgaggag
gccaaggccgcgatgtactcggccgtcggttacgacgacatcgactactcgcccttcggc
accggctccggccaggcggtcccgctggaggactacgactacggtccgtacaaccagtaa
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integrated database retrieval system
