Streptomyces olivoreticuli: QZH56_24480
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Entry
QZH56_24480 CDS
T09517
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sov
Streptomyces olivoreticuli
Pathway
sov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QZH56_24480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sov03019
]
QZH56_24480
03009 Ribosome biogenesis [BR:
sov03009
]
QZH56_24480
Enzymes [BR:
sov01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QZH56_24480
Messenger RNA biogenesis [BR:
sov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QZH56_24480
Ribosome biogenesis [BR:
sov03009
]
Prokaryotic type
rRNA processing factors
QZH56_24480
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
WKK21956
LinkDB
All DBs
Position
5526664..5530254
Genome browser
AA seq
1196 aa
AA seq
DB search
MLEPIEPANHSDSGPGDTLPPRRRRRAASRPAGPPSAGDGGAQQSVTAPAAEAQPAAPAP
AAEASAATDAPATPARPRRRATRKATAPAGAPRTAEPAAEETPEVPAAAAVAADADIEAV
EDAKPARTRRRATRKATAPAGAPQAAEPVVEEPAEAAPAEEEAPVAETRGRRTRRRVAEA
EPEAAAEAAPARTRGRRKVATGDAEAAAAALEAAKAESRAREAATEVPAEPAEAPARGRR
RAVRPPSAVFQAPVFTEPMFQTPETAAAAAAVVVPAEEPEPEQAESAAEAAQPAAGSRRR
RRRRGEPAEVEQAVAEEIVPAVAEETEGGEVEEAEAAHDEEESDRPSRRRRRGGRRRRRG
EAGDAEAESAEEEAAEAEEAEAADEEQEEAYGEEPGAGSAGSRRRRRRRRRSGDAAEAEA
AEGDPERTVVKVREPRKREEREPGTGFDEVQSIKGSTRMEAKKQRRREGREQGRRRVPII
TEAEFLARREAVERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNV
LPSMEAAFVDIGKGRNAVLYAGEVNFEALGMGNGPRRIETALKSGQSVLVQVTKDPIGHK
GARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQILKKIVPEDAGVIVRTAAEG
ASEEELARDVQRLQAQWEEIQQRAKSGNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGE
GAWETIHGYVAHVAPDLTDRLQKWTSDVDVFATYRIDEQLMKALDRKVWLPSGGSLVIDR
TEAMVVVDVNTGKFTGQGGNLEETVTKNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLEA
NRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSEPCVHCNGRGVIV
HMDQPTSVGGGGGGKRGKKKGKGQPHEHEHDHVPAEAAEQAEAVSEEPELEPVAVTEAEL
QPSVGGDEEWFGSPAEARAAAGSRGGRTRRRATRKATAPAGAPKAAAEPEIVVETAAPVE
PVAEPVVAEPVAEPVVEAVVEAAPAEAPVEAAPTAPARPRRRVTRRASAPAGSPTAAEEA
AVVVVTAPAAPAAEPEPAPAPVEPEAVTEPVAEVEADVEVGAEETPAPAKKTARKTAAKK
APAKKATATKKTAAKKTTTAKKATAKKTATKTAAKKAPAKKTAKKAATAPAASAED
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacccattgagcccgccaaccactccgacagcggtcctggagacacgctgccg
ccccgacgccgccgccgtgcggcgtcccgccccgccggcccgccgtcggcaggcgacgga
ggcgcacagcagtccgtgacggcccccgccgccgaggcgcagcccgccgcaccggcaccc
gccgccgaggcctcggccgccaccgacgcgccggccacccccgcgcgcccccgccgccgt
gccacccgcaaggcgacggctccggcgggcgccccccgtacggccgagccggccgccgag
gagacccccgaggtcccggccgccgcggccgtggccgccgacgccgacatcgaggccgtc
gaggacgccaagccggcccgtacgcgccgtcgtgccacccgtaaggccaccgcgcccgcc
ggtgccccgcaggccgccgagccggtcgtcgaggagcccgcggaggccgccccggccgag
gaggaggcgcccgtcgccgagacccgtggccgccgtacgcgccgccgtgtcgccgaggcc
gagcccgaggccgccgccgaggccgccccggcccgtacgcgtggccgccgcaaggtcgcc
accggtgacgccgaggccgctgccgccgcgctggaggccgccaaggccgagagccgtgcg
cgggaagccgccaccgaggtcccggccgagcccgccgaggcccccgcgcgcggccgtcgc
cgcgccgtgcgcccgccgtccgccgtcttccaggcgccggtcttcaccgagccgatgttc
cagacgccggagaccgccgcggccgctgccgccgtcgtcgtgccggcggaggagcccgag
ccggagcaggcagagtcggccgccgaggccgcgcagccggccgcgggcagccgtcgccgt
cgccgccgtcgcggcgagcccgccgaggtcgagcaggccgtggcggaggagatcgttccc
gccgtggccgaggagaccgagggcggggaggtcgaagaggccgaggccgcccacgacgag
gaggagtcggaccgcccctcgcgccgtcgccgccgtggtggccgtcgccgccgccgtggt
gaggccggggacgcggaggccgagtccgccgaggaagaggccgcggaggccgaagaggcc
gaggccgccgacgaggagcaggaggaggcgtacggcgaggagccgggcgccggttccgcg
ggcagccgtcgccgtcgccgccgccgtcgccgcagtggcgacgccgccgaggccgaggcg
gccgagggcgacccggagcgcacggtcgtcaaggtccgcgagccccgcaagcgcgaggag
cgcgagcccggcaccggcttcgacgaggtgcagtccatcaagggctccacccgcatggag
gcgaagaagcagcgccgccgcgagggccgcgagcagggccgccgccgcgtgccgatcatc
accgaggccgagttcctggcccgccgtgaggccgtcgagcgcgtgatggtcgtgcgccag
agcggtgagcgcacccagatcggcgtgctggaggacaacgtcctcgtcgagcactacgtc
aacaaggagcaggccaccagctacgtcggcaacgtctacctgggcaaggtccagaacgtc
ctgccgtccatggaggccgccttcgtcgacatcggcaagggccgcaacgccgtgctgtac
gccggtgaggtcaacttcgaggcgctcggcatgggcaacggcccgcgccggatcgagacc
gcgctgaagtccggccagtccgtgctcgtgcaggtcaccaaggacccgatcggccacaag
ggcgcccgtctgaccagccaggtctcgttgccgggccgctacctcgtgtacgtgcccgag
ggctcgatgaccggcatcagccgcaagctgcccgacaccgagcgcgcgcgcctgaagcag
atcctcaagaagatcgtccccgaggacgcgggcgtcatcgtccgtacggccgccgagggc
gcgagcgaggaggagctggcgcgcgacgtgcagcggctccaggcgcagtgggaggagatc
cagcagcgggcgaagagcggcaacgccccgaccctgctgtacggcgagccggacatgacc
gtccgcgtcgtgcgcgacatcttcaacgaggacttctccaaggtcatcgtcagcggtgaa
ggcgcctgggagaccatccacggctacgtcgcccacgtcgccccggacctcaccgaccgg
ctgcagaagtggacgtcggacgtcgacgtcttcgccacgtaccggatcgacgagcagctg
atgaaggcgctggaccgcaaggtctggctgccgagcggcggttcgctcgtgatcgaccgg
accgaggcgatggtcgtggtcgacgtcaacaccggcaagttcaccggtcagggcggcaac
ctcgaggagacggtcaccaagaacaacctcgaggcggccgaggagatcgtgcgtcagctg
cggctgcgcgacctcggcggcatcgtggtgatcgacttcatcgacatggtgctggaggcc
aaccgcgacctcgtgctgcggcgcctgctggagtgcctgggccgggaccgtacgaagcac
caggtcgccgaggtgacctcgctgggtctggtgcagatgacccgcaagcgggtcggccag
ggcctgctggagtcgttctccgagccgtgcgtgcactgcaacggccgtggcgtgatcgtc
cacatggaccagcccacgtccgtcggcggtggcggtggcggcaagcgcggcaagaagaag
ggcaagggccagccgcacgagcacgagcacgatcacgtgccggcggaggccgccgagcag
gccgaggccgtctccgaggagcccgagctggagcccgtcgcggtgaccgaggcggagctc
cagccgtcggtcggcggtgacgaggagtggttcggcagcccggccgaggcgcgtgccgcg
gcgggttcgcgcggtggccgtacgcggcgccgggcgacccgtaaggcgacggctccggcg
ggtgcgccgaaggccgccgccgagccggagatcgtcgtggagaccgcggcaccggtcgag
ccggtcgccgagccggtggtcgcggagcccgtggccgagccggtcgtcgaggccgtcgtg
gaggccgctccggccgaggccccggtggaggcggctccgaccgctcccgcccggccgcgc
cgccgggtgacccgcagggcgtccgccccggcgggctcgcccaccgcggccgaggaggcg
gccgtggtcgtcgtcaccgcgccggccgccccggccgccgagccggagcccgctccggct
ccggtggagccggaggccgtcaccgagccggtcgccgaggtcgaggccgacgtcgaggtt
ggggccgaggagaccccggccccggccaagaagacggcccgtaagacggccgccaagaag
gccccggcgaagaaggccaccgccacgaagaagacggcggccaagaagacgacgaccgcc
aagaaggccacggccaagaagaccgccaccaagacggcggccaagaaggccccggcgaag
aagacggcgaagaaggccgccacggcccccgccgcttccgccgaggactag
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