Streptomyces olivoreticuli: QZH56_27450
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Entry
QZH56_27450 CDS
T09517
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sov
Streptomyces olivoreticuli
Brite
KEGG Orthology (KO) [BR:
sov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sov03019
]
QZH56_27450 (hrpB)
Enzymes [BR:
sov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QZH56_27450 (hrpB)
Messenger RNA biogenesis [BR:
sov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QZH56_27450 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
AAA_19
AAA_30
AAA_25
nSTAND3
AAA_11
ResIII
Glyco_H_20C_C
Motif
Other DBs
NCBI-ProteinID:
WKK22488
LinkDB
All DBs
Position
complement(6161009..6163561)
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AA seq
850 aa
AA seq
DB search
MIHTDALGRLPVRTALPHLARALDERGVAVLCAPPGTGKTTLVPLVLAGLPAGGPHRRVV
VAEPRRIAARAAARRMAWLLGEAVGDRVGFTVRGERRVGPRTVVEVVTTGVLLQRLQRDP
ELAGVDTVILDECHERHLDADTAAAFLLDVRAALRPELRLVAASATTDAEGWSRLLGDAP
VVEAQGISHPVEVVWAPPERPVRPPHGMRVDPALLEHVAGVVRRALGERPGDVLCFLPGV
GEIARVAGRLGGPEALGAEVLQVHGRAPAAVQDAVLAGGSGGRRVVLATSVAESSLTVPG
VRVVVDAGLAREPRVDHARGLSALTTVRASRAAARQRAGRAGREAPGAVYRCWTEADDAR
LPRFPAAEITVADLTAFALQAACWGDPDASGLALLDPPPAGAMAAARDVLTATGAVTADG
RPTDRGRRMARLGLHPRLARALLDGAREVGARRAAEVVALLSEEPPREYGDDLAAAWRTA
RRGGDAYAARWRAEARRLETAARGAAGEAGQSSPRPSAQGGAAPGDDAVAGLVAALAFPE
RVARARGEGAYLMVSGTGAELGAGSRLRSGQWLAIAVADRPVTAASARVTLGALIDEDTA
REAAGALFRQGEEVGWSEERRDVIARSVERLGAVELTARPLTAPDPSLVREALREGLRRE
GLGLLRWTPEAAGLRQRLAFLHRELGAPWPDVSDEALLEGVDDWLGWDLDRARRRGDLER
LDAGKALERLLPWASGDAARLDELAPERIEVPSGSRIRVDYGGAQPVLAVKLQELFGWQE
TPRVAGGRVPVLVHLLSPAGRPAAVTADLASFWKDGYRSVRAELRGRYPRHPWPEDPATA
APTRRTNARR
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
gtgatccacaccgacgccctcggccggctgcctgtacgcaccgccctgccccacctcgcc
cgcgcgctcgacgagcgcggggtggccgtgctgtgcgcgcctcccggcacgggcaagacg
acgctggtgccgctggtcctcgccgggctgccggccggcggcccgcaccggcgcgtcgtc
gtcgccgagccccgccggatcgcggcccgcgccgccgcccggcgcatggcctggctgctg
ggcgaggccgtcggcgaccgggtcggcttcacggtgcgcggcgagcggcgggtgggcccg
cggaccgtggtcgaggtcgtcaccaccggcgtcctcctgcaacgcctccagcgcgacccc
gaactcgcgggcgtcgacaccgtgatcctcgacgagtgccacgagcggcacctggacgcc
gacaccgccgccgcgttcctcctggacgtacgggccgccctccggcccgaactgcggctg
gtcgcggcctccgccaccaccgacgccgagggctggtcccggctgctgggcgacgccccc
gtggtggaggcgcaagggatctcgcacccggtggaggtggtgtgggccccgccggagcgc
cccgtacggccgccgcacgggatgcgggtggaccccgccctgctggagcacgtcgcgggc
gtggtgcgccgggccctcggggaacggccgggtgacgtgctgtgcttcctgcccggcgtc
ggcgagatcgcgcgggtggccgggcggctcggcgggcccgaggcgctgggcgccgaggtc
ctccaggtgcacgggcgggccccggccgccgtgcaggacgcggtcctcgcgggcggttcg
gggggccgccgggtggtgctggcgacctcggtggccgagtccagcctgaccgtcccgggc
gtacgcgtcgtggtggacgcgggcctggcgcgcgagccgcgcgtggaccacgcgcggggg
ctgagcgcgctcacgaccgtacgggcgtcccgggccgccgcccggcagcgcgcgggccgg
gccgggcgcgaggcgccgggcgcggtgtaccgctgctggacggaggccgacgacgcgcgg
ctgccacggttcccggcggcggagatcacggtcgcggacctgacggcgttcgccctccag
gcggcgtgctggggcgaccccgacgcgtccggcctcgcgctcctcgaccctccgccggcc
ggggcgatggccgcggcgcgcgacgtgctgacggccacgggagcggtcaccgccgacggc
aggcccacggaccgcggccgccgcatggcccggctgggcctccacccccggctggcgcgc
gccctgctggacggggcgcgcgaggtgggcgcgcgccgcgcggccgaggtggtggccctg
ctgagcgaggagccgccgcgcgagtacggcgacgacctcgcggccgcctggcgcacggcc
cgccgcggcggcgacgcgtacgcggcccgctggcgcgcggaagcccgccgcctggagacc
gcggcacggggtgcggccggggaagccggtcagtcgtcgccgcggccttccgcacagggc
ggcgcggcgccgggtgacgacgccgtcgccgggctcgtcgccgcgctcgcgtttcccgag
cgggtggcgcgggcgcgcggcgagggcgcgtatctgatggtgtcgggcacgggcgccgag
ctgggtgccgggtcgcggctgcgtagcgggcagtggctggcgatcgccgtggccgaccgg
cccgtgacggccgcgtcggcgcgggtgacgctgggcgcgctgatcgacgaggacaccgcc
cgggaggcggccggggccctcttccggcagggcgaggaggtcggctggtccgaggagcgg
cgcgacgttatcgcgcggtcggtcgaacgcctgggggcggtggagctgaccgcccgcccg
ctgaccgccccggacccctcgctcgtacgggaggccctgcgcgaagggctgcggcgcgaa
gggctcgggctgctgcgctggacgcccgaggcggccggtctgcggcagcggctggcgttc
ctccaccgggagctgggcgcgccctggcccgacgtgtcggacgaggcgttgctggagggc
gtcgacgactggctcggctgggacctggaccgggcccgcaggcgcggcgacctggagcgg
ctggacgcgggcaaggcgctggagcggctgctcccgtgggcgtccggcgacgccgcgcgc
ctggacgagctggccccggagcgcatcgaggtgccgagcgggtcccggatccgggtggac
tacggcggtgcgcagccggtgctggcggtcaagctccaggagctcttcggctggcaggag
acgccgcgggtggcgggcgggcgggtgcccgttcttgtgcatctgctgtcaccggcgggg
cggcccgcggcggtgaccgccgacctggcgtcgttctggaaggacggctaccggtccgta
cgggcggagctgcgcggccgctacccccgtcacccctggccggaggaccccgcgacggcg
gcgccgacccgcaggacgaacgcccgccgctag
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