Sporomusa ovata: SOV_02960
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Entry
SOV_02960 CDS
T10406
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sova Sporomusa ovata
Pathway
sova03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sova00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SOV_02960 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sova03400
]
SOV_02960 (mfd)
Enzymes [BR:
sova01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SOV_02960 (mfd)
DNA repair and recombination proteins [BR:
sova03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SOV_02960 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_16
Cas3-like_C_2
UB2H
Zeta_toxin
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WWV69067
LinkDB
All DBs
Position
309988..313296
Genome browser
AA seq
1102 aa
AA seq
DB search
MGEKTSLRLLTALPEDKALRQAQAVFALPDAQSLIYGLTGAQKSVFLAAAFQAAARPTII
IAANHEAIDVFRTDFAVFLPEVPIVELPALDMVTFAAAAKSVELAAKRMDVLNRLARGER
LIVLATAEAAMQKVLPKQEFLNSRITIHSDSVVSREELIGSLVAYSYERVDQVDSAGQFS
VRGGIIDIFAVNRSLPLRLELFGDEVDSLREFDPVSQRSVQDLVLADIMPLTQIEHTGKA
AVFVSYLPAIATIILDEPARLREQMTKLTKENPDSKRRVFAWAELVAACQAYNVMYLSLL
LQKIPHTQPTEIISITAKGIAPFHRQIELLIAEIKSWQDKRYTIIIFMSSQDKAVIIERN
LADEGITVIMAQSGPMPLIPGAVLVLTGTLSGGFEFPQARLVVLTEFDIFGRQKKKRRLR
VGKEQQITYFRDINLGDYVVHVNHGIGKYVGVETLEVGGVHKDYLHIRYAGDDKLYVPTD
QVGLLQKYIGSEGEVPRLSKMGGSDWLKVKTKAKAAVADMAKELISLYAQRQLQVGHAFG
PDTPWQREFEDAFAYEETPDQLQAIAEVKHDMEQSRPMDRLLCGDVGFGKTEVAIRAAFK
AVMGGKQVAVLVPTTVLAQQHYQTFSSRFADFGTVVDVISRFRSAREQKATLQKVASGQV
DVLIGTHRILQSDVIFKDIGLLIVDEEQRFGVAQKEKMKRWRANLDVLTLSATPIPRTLH
MSLVGARDMSIIETPPEDRFPVQSYVVEYNEEIIREAIVRELKRGGQVYFVYNRVQTIDK
IRQRLTEILPDATIKTGHGQMPEELLEQVMLDFYEGHDDVLLCTSIIENGLDVSNANTII
IYDADHFGLSQLYQMRGRVGRSHRMAYAYFTYRQDKVLTEVAEKRLQAIKEFAELGSGFK
IAMRDLEIRGAGNLLGREQHGHIVSVGFEMYCRLLDEAVEELKTGKIVVPPPEPTIELTL
DAYLTGDYISDAMHKIEIYQRIAAIRQEAHLTELIDELIDRFGEPPLPVTNLLGVARIKN
LARQLGVRLIAERGGRVEISFGDTPNVTDEGLVKARELFSGKLSFLPGPPDTMRLTTSRL
NLPLIEVLMKLFTCLSGVTDSK
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaaaacaagtttaaggctgttgacagctttgcctgaggacaaagcattacgt
caggctcaggcagtctttgcgttacctgatgcacagagtttgatttatggccttacaggt
gcgcagaagagtgtgtttcttgcggctgcttttcaggcagctgcgcgcccaactatcatt
atagcagctaatcatgaagcaattgatgtgtttagaactgactttgcggttttcttaccg
gaggtgccgatagtagaactgccggcccttgatatggtgacttttgctgctgctgccaaa
agcgttgaactggcggcaaaacgtatggatgttttgaatcgtttagccagaggcgaaagg
ctgattgttttggctaccgccgaagcggcgatgcaaaaggttttgcccaaacaagagttt
ttaaacagccgcataacaatacatagtgacagtgtggtaagccgggaagagcttatcggc
tcattagttgcatacagctatgaacgggttgaccaagtagatagtgccggtcagtttagt
gtgcgcggcggtattattgatatatttgctgttaaccggagtttaccactccggcttgaa
ctgtttggtgacgaggttgattcactacgtgaattcgatccggttagtcagcggtcggta
caagatctggtattggcggatattatgccgttaacccaaatcgagcacactgggaaagcg
gctgtatttgtgtcttatttaccggcgattgctaccataatattggatgagccagcacgg
cttagggaacagatgactaagctgactaaggaaaatcctgacagtaagcggcgggtgttt
gcctgggccgagctggtagcagcttgccaggcatataatgtgatgtatctatccttattg
ctgcaaaaaattcctcatacacagccgaccgagattattagcattaccgccaaagggatt
gcaccttttcaccgtcagattgagctgctgattgcggaaataaaaagctggcaggacaaa
cgatatactattattatatttatgtccagtcaggataaggccgttattattgagcgaaat
ctagccgatgaggggattaccgtaattatggctcagtcagggcctatgccgcttataccg
ggtgctgttttagtacttacaggcacgctgtcaggcggctttgaattcccgcaggctagg
cttgtggtgctgactgagtttgatatcttcggacgccagaagaaaaagcgtcggctccgc
gtgggcaaagaacagcaaattacttatttccgtgatatcaatcttggtgactatgttgtt
catgttaatcatggtattggcaaatatgttggagtagaaacattggaagtggggggagtt
cataaggactatctccatattcgttatgctggtgatgataaattgtatgtacccaccgat
caggtggggctgttacagaagtatattggttctgagggcgaagtaccacgccttagcaag
atgggtggcagcgactggctgaaggttaaaaccaaagccaaagcggctgtagcggacatg
gccaaggaacttatctcactttatgcccagcgtcagctgcaggtagggcatgcctttggc
ccggacaccccttggcagcgggaatttgaggacgcgtttgcttatgaagaaacaccagat
caactgcaggctatcgccgaggttaagcatgatatggaacagtcgcggcctatggatcgt
ttgttatgtggtgatgtgggctttggcaagacggaagtggctattcgcgctgcctttaaa
gcggttatgggtggcaagcaagtggcggtgctagtaccgacgactgtgcttgcacagcag
cactatcaaacctttagctcacgctttgccgattttggtactgtagttgatgttatcagc
cgttttcgcagtgcccgcgagcaaaaggccactttgcaaaaagtggcctcgggtcaagtg
gatgtccttattggcacgcaccgaattttgcagtcagatgtgatatttaaggatatcggt
ctcttaattgtcgatgaagaacagcgttttggtgtggcgcaaaaggaaaagatgaaaagg
tggcgtgcaaatctggacgtgcttactttaagcgctacccccatcccacgtacattgcat
atgtcattggtgggtgcgagggatatgagtattattgaaactccacccgaagaccggttt
ccagtgcaaagctatgttgttgaatataatgaagaaattattcgtgaggccattgtacgt
gaattgaaacgcggcgggcaagtgtattttgtttataaccgggtacagactattgataaa
atacgtcagcgtctgacggaaatattgccggatgccaccattaaaacaggtcatggccag
atgccggaggaactcttagagcaggttatgcttgatttttatgaaggtcatgatgatgtc
ttactatgcacaagcattattgaaaatggcttggatgtatcaaatgcaaataccattatt
atttatgatgccgatcatttcggtttgtcccagctgtatcaaatgcgcgggcgggttgga
cgctcacatcggatggcctatgcttactttacctatcgtcaggataaagtattaactgag
gtagccgaaaaacggctccaggccatcaaagagtttgctgagcttggttcgggtttcaaa
atcgccatgcgggatttagagatacggggggccggtaatctcttaggaagagagcagcat
ggccatattgtcagtgtcggatttgagatgtactgccggttgttagatgaagctgttgaa
gagctaaaaacaggtaaaatagtcgtaccgccgcctgagccgacaattgaacttacgctt
gatgcttatcttaccggtgattatattagtgatgctatgcataagattgaaatatatcag
cgtattgccgctattcgccaggaagctcatttgactgaacttattgatgagcttattgac
cgctttggtgagccgccgctgcctgttaccaatcttttaggtgttgcccggatcaaaaac
ttggcccgccagttgggtgttcgattgatcgccgaacggggcggacgtgtggaaatatcc
tttggtgatacgcctaatgtgactgacgagggcttagtcaaagccagggaacttttttcc
ggcaagttgtcctttcttcccggaccgccggataccatgcgccttactacttcccgccta
aacctgccgctgatagaagtattaatgaagttatttacctgtttgtcaggagttacagat
tcgaaataa
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