Sporomusa ovata: SOV_05890
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Entry
SOV_05890 CDS
T10406
Symbol
helD
Name
(GenBank) Helicase IV
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sova Sporomusa ovata
Pathway
sova03420
Nucleotide excision repair
sova03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sova00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SOV_05890 (helD)
03430 Mismatch repair
SOV_05890 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sova03400
]
SOV_05890 (helD)
Enzymes [BR:
sova01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SOV_05890 (helD)
DNA repair and recombination proteins [BR:
sova03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SOV_05890 (helD)
MMR (mismatch excision repair)
Other MMR factors
SOV_05890 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
UvrD_C
PhoH
DEAD
AAA_30
Viral_helicase1
ResIII
AAA_16
nSTAND3
Zeta_toxin
NACHT
SMC_N
AAA_11
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
WWV69348
LinkDB
All DBs
Position
complement(585693..587924)
Genome browser
AA seq
743 aa
AA seq
DB search
MNQQEQQFELARLAKTLRQVQIQIQKNKEVSGCHQHALRNSLQDYWNSSGGSSIDEAQHV
ETMNRQRALSKHSQGTARHLIKMLKSPYFGRIDFSEAHYNDTEKIYIGIGSLAGEDGEFL
VYDWRAPVSSMFYDYGLGDAAYTCPAGEINGTITLKRQYKIADGHIQYMFDSDLTIDDDI
LQELLAKSVNEKMHTIVNSIQRDQNQIIRDEQHKVLFLAGPAGSGKTSVALHRIAFLLYQ
NREKLTSQNVLILSPNSIFSDYISNVLPEIGEANVVQMTFQDYTARSAAHIPLRLETRAD
YFEHMLVANANKQRAVTISFKSSQLFNEVLTNYLNWLAADWINEHPSITARGETLFDQSE
WQHYYQNSFRMMPPAIRLEKIRTIIQKRMHDLIADVRREKLAQLTEAGEEVNEKVIKALA
RIQARSELKPITDYVEKLTTLDALEEYAALFSDDRLFTVTNTPIPGNWVTIKSQTHKLIS
RGILPYEDISPFLYFQGVVQGFPVKQDIKHVVIDEAQDYSAFQYKILAQLFPNSSWTIVG
DPAQSIQPFVNTASFTEASNILGQEQTLHFCLTKSYRSTQAIQAFCQAILPSAGKSLSIN
RPGPKPTVVQLSNSEDEAATLLSLIQTVQNEGLKSIGIITKNVTQALRIYSQLKGTAKTT
LLIKDDDKFSTGIVIIPSYLAKGLEFDAVLIVNADATNYSQEQDGNILYTICTRALHRLY
LFYTGSLSPYLRRVDKSLYNVSG
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaacaggaacagcagtttgaactagcacgactcgccaaaacactccggcaagta
caaatacaaatacagaaaaacaaggaagtttcgggatgccatcagcatgcactcaggaat
tctctccaggattattggaatagtagcggcggtagttctattgacgaagcacaacatgtc
gagacgatgaatcgccagcgcgcgctttccaaacattcgcaggggactgcccgtcatcta
atcaaaatgctgaaatccccctattttggccggattgacttttctgaagctcattataat
gatacagagaaaatctatattggaattggcagtctggctggtgaagacggcgaattcctc
gtctatgactggcgcgccccggtatcaagcatgttctatgattatggccttggtgatgca
gcctacacctgcccggcaggcgaaatcaatggaactattaccctcaagcgtcaatacaag
attgctgatgggcacatccagtatatgtttgattctgatttaacaattgatgacgatatc
cttcaagaactactagctaaaagtgtcaatgaaaagatgcataccattgttaatagcatc
cagcgggatcaaaatcaaattatccgtgatgagcagcataaagtactctttttggcgggg
ccggccggcagcggcaagacatcggttgccttacaccgcatagcctttttgctctatcaa
aaccgggaaaaattaacctcccagaatgtattaatcctatctcctaactctatttttagt
gattatatctctaacgtcttgccggaaataggcgaagcaaacgttgtccaaatgactttt
caggactacactgccaggtctgccgcccatatccccttgcgtcttgaaacccgtgcagat
tactttgagcacatgctggttgctaatgccaacaaacaacgggcagttactatcagcttt
aaatcatctcaactatttaacgaggttttaaccaactatcttaattggctggcagcagat
tggattaatgaacatccgtctatcacagctcggggcgaaacattgtttgaccagagtgaa
tggcagcactactatcaaaacagctttagaatgatgccgccggcaatccgtctcgaaaaa
atcagaacaattatccaaaaacgaatgcatgatctcatcgccgatgttcggcgagaaaag
ctcgcacaactcactgaagccggtgaagaagtcaatgaaaaggtgatcaaggcactggcc
agaatccaggcaagaagcgagctaaaacccattactgattatgtagaaaaactgacaaca
ctggatgccttagaagaatatgcagcccttttttctgatgacagattatttacagttacc
aacacgcctattcctggtaattgggtcacaataaaatcacagacacataagcttattagc
aggggtatccttccctatgaagacatttctccttttttgtacttccagggtgttgtgcag
ggttttccggtcaaacaagatattaagcatgttgtaattgacgaggcccaagactattcc
gcttttcaatacaaaattctggctcagctattccccaacagttcctggacaattgtcggt
gatcctgcacagtcaatccagccttttgttaatacagccagttttacggaagccagtaac
atcctgggccaagagcaaaccttgcatttttgtttgaccaaaagctaccgttcaacccaa
gccatccaggctttttgccaggcaatattgccaagtgccggcaagagtctttcaatcaac
cgtcctggcccgaaacctacagttgttcaactaagtaattctgaagatgaagctgctact
cttcttagccttatccaaacagttcagaatgaaggtttgaaatctattggaattattact
aaaaatgtaactcaggctctcagaatttattctcagttgaaaggaactgccaagactacc
ctgctaataaaagatgacgacaaattttcaaccggaattgttattatcccctcctatctg
gctaaaggcttagagtttgatgctgtacttatagttaatgcagacgcaactaattatagc
caagaacaagatggtaatattctatatacaatctgtacccgggctttgcaccgtttatat
ctgttttatacgggaagtctgtcgccttatttgcggcgggttgacaaaagcttgtataat
gtcagcggataa
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integrated database retrieval system
