Sporomusa ovata: SOV_23340
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Entry
SOV_23340 CDS
T10406
Symbol
cshA_2
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sova Sporomusa ovata
Pathway
sova03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sova00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOV_23340 (cshA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sova03019
]
SOV_23340 (cshA_2)
03009 Ribosome biogenesis [BR:
sova03009
]
SOV_23340 (cshA_2)
Enzymes [BR:
sova01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOV_23340 (cshA_2)
Messenger RNA biogenesis [BR:
sova03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SOV_23340 (cshA_2)
Ribosome biogenesis [BR:
sova03009
]
Prokaryotic type
rRNA helicases
SOV_23340 (cshA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SecA_DEAD
CbiQ
Motif
Other DBs
NCBI-ProteinID:
WWV71028
LinkDB
All DBs
Position
complement(2328963..2330279)
Genome browser
AA seq
438 aa
AA seq
DB search
MATNFTALGIRPELTQFLKQAGIIEPTPVQIQTIPVVLAGKDVIAQSQTGTGKTLAFLLP
ILEKIRNSAPHVQALIVTPTRELTMQIRDEAVKLAKVLDSNVLAVYGGQDVDEQIRKLRG
QPHLVIGTPGRLLDHVRRKTLVLSGVTKLVLDEADQMLHMGFLDEVEEVIQLTSPKRQTL
LFSATMPPKVRALAARYMTKPADIHIQTQNITLDEIKQIMIELPEAGKLDKLCAMINEYQ
PYLAIVFCHTKERAKALNTALTQRGYKADELHGDLSQAKRAQVMKRFSEARLQLLVATDI
AARGLDIEGVTHVFSYDIPHDTESYIHRIGRTGRAGETGTAITFIVPGEHMYLRLIEQGI
GSTIEKYKANGQKVIKNAAKKASATAPKRFMEKPVAVKKTADKKADSHGGNNLRSRRKPK
PASTKTYGAKRKVSKGKA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaattttacagccctgggtattcgccctgagctgactcaatttttaaaacaa
gccggcattatcgagcctactccggtccagatacaaactattccggtggtattggcaggc
aaggatgttattgctcagtcccagacaggcaccggcaagacgctggcatttttactgcct
attttagaaaaaataagaaactcggccccgcatgtacaagccttaattgtcacccctacc
agggaattaacaatgcagatcagggatgaagccgtaaaactggcaaaggtgctggatagt
aacgtattagccgtttatggcggtcaggatgtggatgaacaaattcgcaaactccgcggt
cagccacatcttgttattggtacccccggccgcttgcttgatcatgtacgccgcaagacc
ctggtgctttcaggcgtcactaagctggtacttgatgaggccgatcaaatgctccatatg
ggctttttagacgaagtggaagaggttattcagttgacatcccccaaacggcaaaccttg
ctgttttcggccaccatgccgccaaaagtccgggcgctggccgcacgctatatgaccaaa
ccggcagatattcatatccagacgcaaaatataaccttagatgaaatcaagcagattatg
attgaactgcctgaagccggtaaacttgataaactctgcgctatgattaacgaataccaa
ccctatctggccattgtcttctgtcataccaaggaacgggccaaggctctcaatacggca
ctcactcagcgcggttacaaagcagacgaactgcatggcgacttgtcccaggccaaacgc
gctcaggttatgaagcgttttagtgaagccaggctgcagctcctggttgccactgatatt
gccgcccgcggcttggatattgaaggtgttacccatgtatttagctatgatatcccgcat
gacaccgaaagttatatccaccgtatcggacgaaccggacgggccggtgaaaccgggaca
gccatcaccttcattgtccccggcgagcatatgtatttgcgtttaattgaacaaggtatc
ggttcaacgattgagaaatataaggccaatgggcaaaaagtaataaaaaatgccgcaaaa
aaagcaagcgctactgcgcctaaaagatttatggaaaaaccagtggccgtcaaaaagact
gctgataaaaaagcagacagtcatggcggcaataatttaagaagccgtcgcaaaccgaaa
cccgccagcaccaagacctatggtgccaagcgaaaagtatccaagggcaaggcgtaa
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