Candidatus Nanosynbacter lyticus: TM7x_00345
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Entry
TM7x_00345 CDS
T03502
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sox
Candidatus Nanosynbacter lyticus
Pathway
sox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TM7x_00345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sox03019
]
TM7x_00345
03016 Transfer RNA biogenesis [BR:
sox03016
]
TM7x_00345
Enzymes [BR:
sox01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
TM7x_00345
Messenger RNA biogenesis [BR:
sox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TM7x_00345
Transfer RNA biogenesis [BR:
sox03016
]
Prokaryotic type
tRNA degradation factors
TM7x_00345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH-I_KHDC4-BBP
KH_2
S1_RRP5
OB_RRP5_4th
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AJA06293
UniProt:
A0A6S4GQ81
LinkDB
All DBs
Position
63542..65659
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AA seq
705 aa
AA seq
DB search
MSIINPSGKEIFSVTTEFCGRPLTLEVNRVGFRTTGSVLVRYGDTVVLGSAQVSSRPVQM
DYFPLSIDYEEKFYAAGKISGSRFIKREGRPSDEAVLIGRLIDRPIRPLFPKGYRQEVQV
VATVLSMDPDFRPDVIAMIAASSALMLTGTPFDGPVSGLRVGRVNGEFKAFLTQEEREKS
DLDLVVAGIESGITMVEAGAKEVSEDVIVDAMAWAHQMMQPAITLQRELAEKVAPAPQEY
TLILPDESIQQTVDEWAKGKFGEKLRRPYPERNEMISQIRAEFHEAMAEKLGMDEEEYNE
VRGDYDEAFTLALHKDVRQGIVAEQVRPDGRQLTEIRPLSSEVGFLPRAHGSSLFTRGVT
QGMNIVTLAPLSYSQLVDTMEVNDGERRYMHHYNAPGYTVGEVKRMGSPGRREIGHGYLA
ERALLPVLPAEEDFPYAIRSVTEIMSQNGSTSMAATCSSCLALMDAGVPLSAPVSGIAMG
LMMDGDTPYVLSDIADAEDFAGDMDFKVTGTAKGITALQMDMKVHGLPVAVLRQAIEQSK
AGRAHILQHMLSVLATPRDQLSPYAPRIEKIKIDPDKIGAVIGKGGETINKITSETGAEV
DIKEDGLITIASPNGESIEKALNWIKSLVEEPEVGKVYKGKVVSIKDFGAFVNILPGVDG
MVHISKLAEGRVNKVTDVVKEGQSVRVKITGIDERGKINLTMIGL
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgagtattattaatccaagcggcaaggagatttttagcgttaccactgagttttgtggt
cggccgctgacactagaggtaaaccgcgttggctttcggacaactggtagcgtgctagtg
cgttacggcgataccgtggttttgggtagtgcgcaggtgagcagtcgcccagtccagatg
gactattttccattatcgattgattatgaagaaaagttttatgcagcgggtaaaatttcc
ggtagccgatttattaagcgtgaaggtcgtccaagtgacgaggctgtgctgattggtcgg
ttgattgatcgtccaattcgtccgctatttccgaagggctaccgccaagaagtgcaggtt
gtagcaacagtactaagcatggatcctgatttccgcccagatgttattgcgatgattgcg
gcgtctagtgccttaatgctaactggcacgccttttgacggtccagtgtctggtctgcgt
gtcggccgcgtcaatggagaatttaaggcattcttaacgcaggaagagcgcgaaaagtcg
gatcttgatttggtggtggctggtattgaaagtggtatcactatggttgaggctggtgct
aaagaagtctcagaagatgttattgtcgatgctatggcgtgggcgcaccagatgatgcag
ccagcaattaccctgcagcgggaattggcggaaaaagttgcgccagctccgcaggaatat
accttaatcttgccagatgaatcaattcagcagacagttgatgagtgggctaagggtaag
tttggtgaaaaacttcgtcgcccatatccagagcgtaatgaaatgattagtcagattcgt
gctgaattccatgaggcgatggcggaaaaacttggtatggatgaggaagaatataatgag
gtacgtggtgattatgatgaggcgtttactttggcgcttcataaagatgtacgtcaggga
attgttgcagaacaagtccgtcctgatggtcgacaattaacagaaattcgtccgcttagc
tcggaagttggcttcttgccgcgcgctcacggctccagtctgtttactcgcggcgtgacg
cagggtatgaacattgttactttggcgccgctgagctattcacaactcgttgacacaatg
gaagttaatgatggcgaacgacgctatatgcaccattacaatgcgccaggctatacagtc
ggtgaagttaagcgaatgggtagcccgggtcgacgtgaaattgggcacggttatttggcg
gaacgagcgctgttgccagtattgccagcagaagaagactttccttatgctattcgttct
gtgacagaaataatgagccagaacggctcaacgtcgatggcggcaacttgttcaagctgt
ttggcgttgatggatgcgggtgtgccattgtcggctccagttagtggaattgctatgggt
ctgatgatggacggtgatactccgtatgtactgagtgatattgctgacgctgaagacttc
gctggcgatatggactttaaggttacaggtacagcaaagggaatcactgctctccagatg
gatatgaaggtgcatggcctaccagtggcggtgctgcgtcaagcaattgagcagagtaag
gccggtcgcgcgcacatcttgcagcatatgctgagtgtgttggctactccacgtgatcag
cttagtccgtatgcgccacgaattgagaagattaagattgatccagataagattggtgcg
gtgattggtaagggtggagagaccatcaataagattacctcagaaaccggtgctgaagtt
gatattaaggaagatggtttgattacaatagctagccctaatggtgaatcaattgaaaag
gcactgaattggattaagagcttggtcgaggagccagaagttggcaaggtttataagggt
aaagtcgtcagtattaaggactttggtgcttttgtaaatattctgccgggcgttgatggc
atggtgcacatttcaaagttagccgaaggtcgagtcaataaggtcactgatgtagttaaa
gagggccagtcggttcgcgtaaaaattactggaattgatgagcgcggtaaaatcaatttg
acgatgatcggtttgtaa
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