Candidatus Nanosynbacter lyticus: TM7x_00745
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Entry
TM7x_00745 CDS
T03502
Name
(GenBank) single-stranded DNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sox
Candidatus Nanosynbacter lyticus
Pathway
sox03410
Base excision repair
sox03430
Mismatch repair
sox03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TM7x_00745
03430 Mismatch repair
TM7x_00745
03440 Homologous recombination
TM7x_00745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sox03400
]
TM7x_00745
DNA repair and recombination proteins [BR:
sox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TM7x_00745
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TM7x_00745
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TM7x_00745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
PIGA
Toprim
Motif
Other DBs
NCBI-ProteinID:
AJA06337
UniProt:
A0A6S4GTK8
LinkDB
All DBs
Position
139610..141238
Genome browser
AA seq
542 aa
AA seq
DB search
MSLFEKILVARGLTTRVAREAFLRPDYAAVKHDPFLLPDMEKAVARLKQAREQGEKIVIY
GDYDIDGLSATALLLDAFGKFGFEDVDAFIPNRFVEGYGMTMGAVDKVRDMGADLIVTVD
TGSLCHAEIAYATSLGIDTVVTDHHNVAETPPPSVAAVNPKFSGHSYPFRDLCGAGVAFK
LVQALQTELDGLSDGYEKWLLDLVALGTVCDIVTLADENRANVYWGLEVLKKQQRPGLKA
LMAVAGIEPEQVNARHLGFGLGPRMNAAGRLETAQHALDMLVAHDGLAALEASEKLEELN
IKRRSIQDAIFEEACVQAEKLANDRVLVVSSDGWNHGVIGIVASKLVEKYKKPVFIIGER
GEEATGSARSFGDFSAADAVRAADDIIIKGGGHGAAAGVTLETEKIGDFRCRVNEFYDSL
QLTNQERYLLPKSDVEIDDFSEINEELVENLAKMEPFGNGNPEPVLKITRGSVLSVRRMG
ADGQHVKLALRDKNGKVLQMLAFNAPEEFFREPGDEVAAWFQPTVNEWQGIRSVEGRLLH
LA
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgagtttatttgagaaaattttagtagcgcggggcttgacgacccgggtagcgcgcgaa
gcttttttgcgaccggattatgcggcggtgaaacatgatccgtttttgctgccggatatg
gaaaaggcggtggcgcggttgaaacaagcgcgggagcagggcgaaaaaatcgttatttac
ggtgactatgatattgacgggctgagcgccacggcgctgttgctggatgcgtttggtaag
tttggttttgaggacgttgacgctttcatcccaaatcggtttgttgagggttatggcatg
accatgggcgcggtggataaggtgcgcgacatgggcgcggatttgatcgtgacggtggat
accggtagtttgtgtcatgcagagattgcgtatgccaccagcttgggaattgatacggtg
gtgacagatcatcacaatgttgccgaaacgccaccgccgagcgtggcagcggtgaatccg
aagttctcaggacacagttatccattccgtgatttgtgtggtgcgggcgtggcatttaag
ttggtgcaagcactgcagactgagctggatggcctatctgatggttatgaaaagtggctg
ctcgatttggtggcactggggacggtctgtgatatcgtgacgttggctgatgaaaatcgg
gcgaatgtgtattggggactagaggttctgaaaaaacaacaacgcccaggactgaaagcg
ttgatggcggtagcgggtattgagccggagcaggttaatgcccgtcatctgggctttggt
ctgggtccgcgaatgaatgcggcggggcggttggagacggcgcaacacgcgttggacatg
ctagtggcgcatgatggactggcggcgctggaggccagtgagaagctggaggaattgaac
atcaagcggcgcagtattcaggatgccatctttgaggaagcatgtgtgcaagccgagaag
ctggcgaatgaccgtgtgttggtggttagtagcgatggctggaatcacggtgttatcggc
attgtggcgtcaaagttggtggagaaatataaaaagccggtgtttatcattggcgagcgc
ggcgaggaagcaacgggttcggcgcgcagttttggtgatttttcagcggccgatgcagtg
cgggcggcggacgacataatcatcaaaggtggcgggcacggagcggcggcgggcgtgaca
ctggagactgagaaaattggcgattttcgttgtcgcgtgaatgagttttatgattcgcta
caactaacaaaccaagagcgatatttgctaccgaaatctgatgtagaaattgatgacttt
tcggaaattaatgaagaattggtggagaatttggcgaaaatggagccatttggcaatggc
aacccagagccagtattaaaaattaccagagggagcgtgctgagcgtgcggcgaatgggt
gcggatggacaacacgttaaattagcactgcgtgataaaaacggtaaggtgttgcagatg
ctggcgttcaacgcgccagaggaatttttccgcgagccaggcgacgaggtggcggcgtgg
ttccagccaaccgtcaatgaatggcaaggaataaggtctgttgaggggcgattgttgcat
ttagcttag
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integrated database retrieval system
