Candidatus Nanosynbacter lyticus: TM7x_02880
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Entry
TM7x_02880 CDS
T03502
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sox
Candidatus Nanosynbacter lyticus
Pathway
sox03420
Nucleotide excision repair
sox03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TM7x_02880
03430 Mismatch repair
TM7x_02880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sox03400
]
TM7x_02880
Enzymes [BR:
sox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TM7x_02880
DNA repair and recombination proteins [BR:
sox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TM7x_02880
MMR (mismatch excision repair)
Other MMR factors
TM7x_02880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_11
AAA_30
AAA_22
ResIII
SgrR_N
AAA_14
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
AJA06584
UniProt:
A0A6S4GTC9
LinkDB
All DBs
Position
complement(542573..544675)
Genome browser
AA seq
700 aa
AA seq
DB search
MTNFTDGLNDEQARAVTHGDGPLLILAGAGSGKTKTLTHRIAYLIGELKVFPSRILAVTF
TNKAAKEMRQRLAQLLSENADNRQFMPWMGTFHSICVRILRMDGASIGLDRRFLIYDTDD
QVSLMKQIMKARGLTDKDIKPRAVLSVISNAKNEMRSAEDFSMSARGPREQKIAELFFAY
EKSLKEVAALDFDDLLIKTVELLRSKSDIRQKWQRQFEYILIDEYQDTNAVQYALIKLLV
NERRNLCVVGDDAQSIYSFRGADYTNILNFERDFPGTTVVKLEQNYRSTGAILNMANSLI
SHNIHRTDKNLWTANGDGVDPKLWQLYSESEEAIAIANEIQAQIANGRQYGDVAVLYRTN
AQSYAIERALRQSYVPYKIVGGLRFLDRAVIKDVLAYLRLLYQPSDRVSFLRIVNTPKRG
IGAVSMAKFLEWNAASGRDIIGGLLAVEEADNLTARAKRPLLELGKILEELQREIDGSPA
ELIEKIMKQTGYGDFINDGTPQADERMENTGVLVAEAKAYVDVATFLEEMALMSSADTTA
DQQVTLMTLHAAKGLEFPVVFLAGLEEGILPHARVFDSGKADDIEEERRLCYVGVTRARE
ELFVSCANSRTQFGQIGYNVPSRFLDEMGLLAGGVDKPAQPMIEPEFYAEDIGLEVGDRV
RSPSFGSGEIIDSEGLGVTVKFDDGNIKKLNVEFARLEKI
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgactaattttacggatggtttaaatgacgagcaagctcgggcggtgacgcatggcgac
ggaccgctattgattttggcgggcgctggttctggaaaaacaaaaacactgacacatcga
attgcttatttgatcggtgaactgaaggtttttcctagtcgaattttagcagtaaccttt
actaataaagcggctaaggaaatgcggcagcgattggcacagttgctgagtgagaacgct
gataatcgtcaatttatgccgtggatggggacgtttcatagtatttgtgtacggatacta
aggatggacggcgcaagtattgggctggacaggcggtttttaatctacgatactgacgat
caagtaagcctgatgaaacagattatgaaagcgcgcggtctgacggataaagatattaag
ccacgggcagtgctgtcagttatctcaaacgctaaaaatgaaatgcgcagcgcggaagat
ttttcaatgtcggcgcgcggtcctcgcgagcagaaaattgctgagttgttcttcgcctat
gaaaaatccttgaaagaggtggcggcgctcgacttcgatgatctattgataaagaccgtg
gagctattacgatccaagtcggatattcgccagaaatggcagcgtcagtttgagtacatt
ctaattgatgagtatcaggacacaaatgctgtgcagtacgcgctaataaaattattggtt
aacgaacggcgtaatttgtgtgtggttggtgatgacgcgcagtcgatttatagttttcgt
ggcgctgattatacgaatattcttaattttgagcgcgattttccggggacaaccgtggtt
aaattggagcaaaattatcgctcgacgggcgcaatcttaaatatggcaaattcactaatt
agccacaatatccatcggactgacaagaatttgtggacggcaaatggtgacggcgttgat
ccaaagttatggcaactgtatagcgagtcggaagaagcgatagctattgcaaatgagatt
caggcgcaaattgctaatggccgccagtatggcgatgtggcggttttgtatcggacaaat
gcccagagctatgcgattgagcgggcgcttaggcagagttatgttccgtataaaattgtt
ggtggtctaaggtttttggatcgggcggtcattaaagatgtgctggcttacctgcgttta
ctgtatcagccaagtgatcgggttagttttttgcgaatcgtcaatactccaaagcgtgga
atcggcgcagtcagtatggctaagtttttggaatggaacgcggcttcgggccgagatata
atcggtggtcttttggcggttgaagaggcggataatttgacggcgcgagcaaaacgacct
ttgctagagttgggaaaaatcctggaggaattacagcgggaaattgatggttcgccagca
gagttaattgaaaagataatgaaacaaactggttatggagattttatcaatgacggcacg
cctcaggccgatgaacggatggaaaatactggtgttctcgtagcggaggcgaaggcttat
gttgatgtggcgactttcctagaagaaatggcgctgatgtcttcggcggatactacagct
gatcagcaggtgactttgatgacgctacatgctgccaaaggattagaatttccggtggtt
ttcttggcggggctggaagagggaattttgccacacgcacgagtgtttgatagtggtaag
gctgacgatattgaggaagagcgtcggctgtgttatgtgggggtaactagggcgcgagag
gaattgtttgttagctgtgctaactcccggacacagtttgggcagattggctataatgtg
ccgtcgcgattcttggatgaaatggggctgttagcgggtggggtcgataagccagctcaa
ccgatgatagagcctgaattttatgcggaggatattggattagaggtgggcgatcgtgtt
cgcagcccaagcttcggttcaggtgaaattattgatagcgaaggtcttggcgtgacggtg
aaatttgacgacggaaacattaagaagttgaatgttgaattcgcgcgcctggagaaaatt
tga
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