Candidatus Nanosynbacter lyticus: TM7x_03075
Help
Entry
TM7x_03075 CDS
T03502
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sox
Candidatus Nanosynbacter lyticus
Pathway
sox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TM7x_03075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sox03019
]
TM7x_03075
Messenger RNA biogenesis [BR:
sox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TM7x_03075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
NAD_binding_1
Ribosomal_S18
Motif
Other DBs
NCBI-ProteinID:
AJA06601
UniProt:
A0A6S4GU23
LinkDB
All DBs
Position
complement(575734..577224)
Genome browser
AA seq
496 aa
AA seq
DB search
MIEVVIAAAVGAGTGVAGLVGYQRTRQINGKNQIERDLADAKTKASDIVLKAKDEALKIE
NERRKEWQKTENRLADRERTLDNKLEELDRRAEKLRTHEDEVDNLKNEIRDIRTRQQEKL
EKIAGLKKKDAADKLMQMTERDIKQDLAGLVSKLQHDAMDDAEERAQMILVTAMERMSSE
VTAERTVTAVKLTDDEMKGRIIGKEGRNIQALQRETGVDILVDDTPGMIVLSSFDPVRRQ
VARLSLEMLMKDGRIHPARIEEVVAKAKKQIDKEVRQAGEDAMRETGVVGIPKEMLLLLG
ELKFRTSFGQNVLKHSTEMAQIAGMIAEEIGADVRITKIATLLHDVGKAVTHKIEGKHHH
IGAELARKYGMDERIVHAIEAHHDDIEATTPEAIIVRVCDAASAARPGARNVSAENFAER
MRDLENVATSFEGIDKAYAISAGREVRVIVKPQSIDDLSAIKLARDIATKIESTMQYPGT
IKVNVIRETRAIEFAK
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgatagaagtagttattgccgcggctgttggggctggtacgggtgttgctggtcttgta
ggatatcaacgaacgcgccaaattaatggcaaaaatcaaattgagcgtgatttggctgac
gccaagacgaaggctagtgatattgtcttaaaagccaaagacgaggcgctgaaaattgag
aatgagcgccgtaaagagtggcaaaaaaccgagaatcgtttggcggatcgcgagagaacg
cttgacaataaactagaggaattggatcgtcgagcagagaagttacggacacacgaagat
gaggttgataaccttaaaaatgagattcgtgatatccgtacgcgtcagcaggagaagctt
gaaaaaattgctggactgaaaaagaaagacgcagccgacaagctgatgcagatgactgag
cgtgatattaagcaggatttggctggtttggtgtcaaaattgcaacatgatgcaatggat
gacgccgaagagcgggcgcagatgattttggtgacagcaatggagcggatgagcagcgaa
gtgacagccgagcgcacagttactgcggttaagttgactgatgatgagatgaaaggtcga
attatcggtaaggaaggccgcaacattcaggccttgcagcgtgaaactggtgttgatatt
ttagtggatgatacgccaggtatgatagtgttgtcgagctttgatccagttcgtcgacag
gtggctcgtttgagtttggagatgttaatgaaggacgggcgcattcatccagcgcgcatt
gaggaagttgtcgctaaggctaaaaagcaaattgataaagaggtcaggcaggctggtgaa
gatgctatgcgcgagactggcgtggtcggtattccaaaggaaatgttgttgctgcttggt
gaactgaagtttcgtactagctttggccagaacgttctgaagcactcaacggagatggcg
caaattgctggtatgattgctgaggaaattggtgcggatgtgcgtattacaaaaattgct
acgctgttgcatgacgttggcaaggcggtgactcataaaattgagggcaagcatcatcac
attggcgcggaattagcgcggaaatatggcatggatgagcggatcgtgcacgcgattgag
gcgcaccatgatgatatcgaggcaactacaccagaggcgattatcgttagggtttgtgac
gcagcttcagccgcccgtccgggtgcccgcaacgtttcggctgagaactttgctgagcga
atgcgtgatttggagaatgtggcgactagctttgaaggaatcgataaagcctacgcaatt
tcggctggacgtgaagttcgagtgatcgtcaagccgcagtcaattgatgatttgtcggca
attaaattggcccgagatattgccacgaagattgagtcgaccatgcagtatcctggcaca
atcaaggttaatgtcattcgcgaaacgcgagcaattgagtttgcaaaataa
DBGET
integrated database retrieval system