Sitophilus oryzae (rice weevil): 115874602
Help
Entry
115874602 CDS
T07985
Name
(RefSeq) uncharacterized protein LOC115874602 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
soy
Sitophilus oryzae (rice weevil)
Pathway
soy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115874602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soy03021
]
115874602
03019 Messenger RNA biogenesis [BR:
soy03019
]
115874602
Transcription machinery [BR:
soy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115874602
Messenger RNA biogenesis [BR:
soy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115874602
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_helical
Pcf11_C
zf_PCFS4
zf_UBZ
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
115874602
NCBI-ProteinID:
XP_030745667
UniProt:
A0A6J2X3G9
LinkDB
All DBs
Position
Unknown
AA seq
1714 aa
AA seq
DB search
MTTAEEIKTEYTSSLADLTFNSKPLINMLTMLADENLPNARVIVEAIEEHLSKVSADVKL
PILYLIDCIVKNVGQRYTSLFSQNIVTTFSSVFKVVDEKTRSEMFKLRQTWNDVFPQTKL
YAIDVQINMIDPAWPVTAQPANSIHLNPKFLKGNTPAKPKSANDVTSDLMLKPGMPSPDR
ETLLMQEQLIQKKKELLELQRKTLELEVLQTQVKLQEQMKTGAPPVSTNILLKPEVAKQL
IPDMVPKTKAPLGNSMMNQRLQNASQPRINPVNPSLATAKPIRDPRLLRQQRMLQQQQQQ
QQDLQKAEPEPSAAPTTTIPSSQKSSLFENNKNLTSKQGVRDIHKDPRLSNKTDKKSKTS
PKSYQAPPTTNPEPVKNNENSQKADRSPVKSNSSASFSSSSSSSLDSPTKSKVRSGSNKN
KKRDKSEDASSAVNKRGKLSKNDNGTFSSKNSDDGSTFKSVKTSRNRNYIRRNLPESPVL
QQDQDLRTLPSVNDSQRVQQSETATDQPPEALKPMDVDLRQLPPAISKKRSSIEPADQPS
KKSKSFDMLFGNEDTDLRQLPVTAENKTAERPPTPPPPIISAKETEQLNQKSQKPDLDAI
RAKLANATNREKVLSKSFNKKKLLGESMEDLDLRKSLSPSMKSKIMISPEEEKVIKSGHM
TKEQEKQFLNKIFMQIEKNKLREAQEKDNEESSHNMSLQPISDDELSFDGDDVEEPPKDK
DNRNLLLENRGLTAFNDKDERFSVSQMPVIPPEEDNIVPQPVQFYPRALRPPFRGMMQWR
GRGRGVMPQAGLQPRPPIRPWLHQQPNWRNAMGAPHWPQGPDYGAPVMADDEASRSPGQD
GALQEFTVLQEEIKTLSIDGVPRDIRIYNDTAVIFLNWDDPREISFQTGVRHVSFNNQET
YLLSFGEGYKECLINGYTFMVKLGVPSREIFINDVGFECFFGGNPINVTVGGINLSVKLE
GPPPQVKIGEVKRTDLVVGKINLIINAKIIVPVFLDGKVQKFAIDGVPSTLKFVDSLKRV
LINDVPFNVEFGGLPKPFTVNGKKHFIRFSVLPKGVKPGSVRIRDMEGENGVSPRREEPG
HVTLVAGGEEPVGSSELVSRPMTGSLSPDNRSNSPNFFSNILQPSLNNFDVISNVLSTSL
TPATPSSGSYQVEIPGIDGTQTQDGTQPQQPPTPQIPPININDLFEKLVASGFVKTRETQ
SNVPQSNNIGFNSNGTTNSVVPTIPEYTPTEKNSIIKPTRRTVVDVLKPVTFARPETLKI
RQAALYAMLYSGMQCSSCGMRFPPEASMLYSQHLDWHFRQNRKGKKNARVASSRRWYYSL
TDWKNYEEIEDLEEREKNYFDQQQQQQAEVAEENEEEVEIPTVPADPGSTDEMCQVCRDA
FEQFFNEEKEEWHLKNAIKIDNQTYHPVCYEDYQQSILESTLEESKLEDGSLPAQNKLIP
GLEIILDDDDDEDEVYEPRTPNEVVSLEESDESKTLDDEKSKEDVPKEDALVEDEDDDDV
ILNEVAPIKIVVDDDDDDDVATANKEAFSQPVRTKKEKHVDDDGFVDVGEGFVSLNKVGQ
IKIKSEPMDEDDIQTTPLDSSDITNTSNLTADKESSEPEPATPIQAEPVTSHPQMISSMD
GNVELSSAPLVTPTTIASGARIKINISKSLPVITPKESSEPSVNSELESNVAKSDAVVEE
PEIVHFKPSLKEVKLKKMPAVKKGNELTGLCSIM
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccgcagaggaaattaagacggaatacacttcaagcttggcagatttaactttc
aatagcaagcccctcattaatatgttgacaatgcttgctgacgaaaatttgccaaatgcc
agggtcattgttgaagctatagaagaacatctgtctaaggtctcagccgatgttaaacta
ccaattctatacctaatcgactgcatagtgaaaaacgtaggacaaagatacaccagctta
tttagccagaacatcgtaacgactttttccagcgtatttaaagtggtggatgaaaaaacc
agatcggagatgttcaagcttcggcagacatggaatgacgtatttccccaaacaaagctg
tatgcgatagatgtccagatcaacatgatcgaccctgcttggccagtcactgcccaaccg
gcgaacagtattcatttgaatcctaagtttttaaaagggaatacccctgctaaaccgaaa
tcagctaacgacgtgacatcagatttgatgctgaaacccgggatgccgtcaccggataga
gaaacgttgctaatgcaagagcagcttattcaaaaaaagaaggagcttttggaacttcaa
agaaagacgctcgaactggaggtgttacaaacgcaggtcaaactgcaagaacaaatgaaa
actggagctccgccagtcagtacgaatatacttttaaaaccggaagtcgccaaacaattg
attcctgatatggtgcccaaaacaaaagcacctttgggtaattctatgatgaaccaacgg
ttacaaaacgcctctcaaccccgaataaaccccgtaaacccgtcactggccacggcgaaa
ccaatcagggatccccgtctactacggcaacagcgcatgttacaacaacaacagcaacaa
caacaggacctccaaaaggcagagccggaaccgtcagccgcacctactactactatacca
tcatcacaaaaatcttccctatttgaaaacaataaaaatctaaccagtaaacaaggtgta
agagatattcataaagatcctcgtctctcaaacaaaaccgacaaaaaatccaaaacatcc
ccgaaatcctaccaagcaccccctacgactaatcccgaaccagttaaaaataacgagaat
agtcagaaagctgaccgttcgccggttaagtctaattctagcgcaagtttctctagttca
agttcgagtagtctagattcgccgactaaaagtaaggttaggtcaggttcgaacaagaac
aaaaaacgcgataaatcggaagacgcttcttctgctgtaaacaaacgggggaaattgtct
aaaaacgataatggtacgtttagtagtaaaaattctgacgacggttctacttttaaaagt
gtcaaaacgtcgagaaatcgtaactatataaggagaaatttgccagagagtccggtgttg
cagcaggaccaagatttgaggacattgccgtcggtgaacgattctcagagggttcaacag
agtgaaacagctacagatcaaccaccagaggcactaaaaccaatggatgtcgatctaagg
cagctacctccagctataagcaaaaaacgttcttcaatcgaacctgctgatcaaccatca
aagaaaagtaaaagttttgatatgctattcggtaacgaggacacggatttgaggcaatta
cctgtaactgcggaaaacaaaactgccgaacgacctcctacgcctcctcctcccataata
tcagcgaaagaaactgaacagctgaatcagaaatctcaaaaacccgacctagatgctatt
cgggccaaactagcaaacgccaccaatcgcgaaaaagtactatcaaagtcatttaacaaa
aagaaactcctcggggaatctatggaagacttagatttgcgaaaaagcctgtcgccgagt
atgaagagcaaaattatgatctcgcccgaggaagagaaggttatcaagtcaggccacatg
actaaagaacaagaaaaacaattcttgaacaagatcttcatgcagatcgaaaagaataaa
ctacgggaagcccaggagaaagataacgaggaatccagccataacatgtcgttacagcca
atcagtgacgatgagctatcatttgacggcgatgacgtggaagaaccacccaaagataaa
gacaacagaaacctgctactcgaaaatcgaggccttacggcgtttaatgataaagatgag
agatttagtgtgtcccaaatgcctgtaattcccccggaagaagataatatcgtgcctcaa
ccagtacagttttatcctagagctcttcgacctccgtttagagggatgatgcagtggaga
ggtcgaggcagaggagttatgcctcaagcgggtcttcaaccaagacctcctatcagaccg
tggttgcaccaacaacccaactggaggaatgctatgggtgcgcctcattggcctcaaggt
ccagactatggtgctcctgtcatggccgatgatgaagcatctagaagtcccggacaagac
ggagctttacaagagttcacagtactgcaggaagaaatcaagactttgagtatagacggc
gtgccgagggatataaggatatataatgataccgccgtgattttcttgaattgggacgat
ccccgggagatatcttttcaaaccggcgtgcgacatgtttccttcaacaaccaggaaacg
taccttttgtcttttggagagggttataaagagtgccttattaacggatatacattcatg
gtgaaactaggtgtcccaagtcgggaaatctttatcaacgacgtgggcttcgagtgcttc
ttcgggggaaaccccatcaacgtcaccgtcggcggaatcaatctcagcgtgaagctcgaa
ggaccgccgccccaagtcaaaatcggcgaagtgaaacggacggacctagtcgtgggcaag
atcaacctcatcatcaacgctaagatcatcgtgcccgtgtttctcgacggcaaagtgcaa
aaatttgctatcgacggcgttcccagcacgttaaaatttgtagattcgttgaaaagagtt
ttaataaatgatgttccttttaacgttgaatttggtggtcttcctaaaccctttactgtc
aacggtaaaaagcattttatcaggttttcagtgttgcccaaaggagtgaagcctgggtcg
gtgcggatcagggatatggagggggagaacggtgtgagtcctaggagggaggagcctggt
cacgtgacgttggtggccggaggggaggagcctgttgggtcgtcggagttggtttccagg
ccgatgacaggctccctgtcgccggataataggagtaattcgcccaacttcttcagtaat
atattgcaaccgtctctaaataatttcgacgttatctctaacgttctatctacctctcta
acacccgccacaccgagttccggcagctaccaagtcgaaatacccggcatagacggtacc
caaacccaggacggtactcaacctcaacagcctccaacaccccaaatcccaccgatcaac
atcaacgatcttttcgaaaaactagtcgcctcaggtttcgtcaaaaccagagaaacccaa
agtaatgtacctcagagcaacaacatagggttcaacagtaatggaactacaaatagtgtt
gtacctaccattccagaatatacgccaaccgagaagaacagtattataaaaccaaccaga
aggaccgtagttgacgtattgaaacctgtgacctttgcaaggcctgaaacgttgaaaatc
cgacaggcagcgctgtatgcgatgttgtattcaggcatgcaatgttcgagttgtggaatg
aggtttcctccggaagccagtatgctgtacagccagcatttggattggcatttcaggcag
aacaggaagggtaaaaagaatgccagggttgccagtagtcgaagatggtactactctttg
acggattggaagaactatgaagagatcgaagatctagaggaaagagaaaagaactatttt
gatcagcagcagcagcagcaagctgaggtggctgaagaaaatgaggaagaggtggaaata
ccaacagtaccagccgatcctggaagtactgacgaaatgtgccaagtgtgcagggacgca
tttgagcagttcttcaatgaagaaaaggaagaatggcatttgaagaatgcgataaaaatt
gataaccaaacttaccatccggtttgttatgaagattatcagcaatctattttggagtcg
accttagaggaaagcaagcttgaagacggctctttacctgcccaaaacaaactaattccc
ggcctggaaatcattctggacgacgacgatgatgaggatgaagtatacgaacctagaact
cccaatgaagttgtgtctcttgaggaaagtgatgaatcaaaaacactagatgacgagaag
agtaaagaagatgtacccaaagaagacgcccttgttgaggacgaggatgacgatgacgtt
atattaaacgaagtggcccctattaagattgtcgttgacgacgacgacgatgacgatgtc
gcaactgccaataaagaagctttcagtcagccggttcgaacgaaaaaagaaaaacacgtg
gacgatgacgggttcgttgatgtcggcgaaggattcgtcagtttgaacaaagtcgggcaa
atcaaaatcaaaagcgaacctatggacgaagatgatattcagacaacaccgttagactcc
agcgacatcacgaacacctccaaccttaccgccgataaagagtcatctgaacccgaaccg
gcaacaccgatccaggccgaaccggtgacgtcacacccccaaatgatctcgtcgatggac
ggcaacgtggaactgtccagcgcgcctttggtcacgcccaccaccatcgctagcggcgcc
aggatcaaaataaacatttcaaaatctctgcctgtgataactcctaaagagtctagtgag
cctagtgttaatagtgaactcgaatcgaacgttgccaagagcgacgccgttgtggaagaa
ccggaaattgtgcattttaagccctcgttgaaagaggttaagttgaagaaaatgcccgcg
gtcaagaaaggtaacgaattgactggtttgtgctctataatgtga
DBGET
integrated database retrieval system
