Sitophilus oryzae (rice weevil): 115875559
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Entry
115875559 CDS
T07985
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
soy
Sitophilus oryzae (rice weevil)
Brite
KEGG Orthology (KO) [BR:
soy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
soy03016
]
115875559
Enzymes [BR:
soy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
115875559
Transfer RNA biogenesis [BR:
soy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
115875559
Prokaryotic type
tRNA splicing ligases
115875559
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF6471
Motif
Other DBs
NCBI-GeneID:
115875559
NCBI-ProteinID:
XP_030746914
UniProt:
A0A6J2X7R6
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRNYNQELEYLEKINSYCWKIKKGFQPNMNVEGVFYVNQTLEKLMLDELRNACRPGMV
GGFLPGVKQIANVAALPGIVGRSVGLPDIHSGYGFAIGNMAAFDMGDPNSVVSPGGVGFD
INCGVRLLRTNLFEQDVLPVKEQLAQSLFDHIPVGVGSKGIIPMNSKDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAACKMGIEEVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARIN
SVEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFRVTPDDLDMHVIYDVSHNIAKVE
EHIVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVMTGTEQGM
LETFGSTCHGAGRALSRAKSRRNIEYTEVLRRLEDMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggtacgtaactataatcaagaactagagtatctagagaaaataaattcatattgc
tggaaaataaagaaaggttttcaacctaacatgaacgttgaaggagtcttttatgttaat
caaacactggaaaaacttatgttagacgaattaagaaacgcttgcagaccaggtatggtt
ggaggtttcctaccaggtgtaaaacagattgcaaatgttgcagctcttccaggaattgtt
ggtagatctgttggtttacctgatatccattctggatatggttttgccataggaaatatg
gctgctttcgatatgggtgatccaaattcagtagtttctccaggaggcgtaggttttgat
ataaattgtggcgttagattattaagaacgaatctgtttgaacaggatgttctacctgtt
aaagaacaacttgcacaaagtttgtttgaccacattcctgttggtgtaggctcaaaagga
attattccaatgaattccaaagatcttgaagaagctttggaaatggggatggactggtcg
ttgagggagggctatatttgggcagaagataaggaacattgtgaggaatatggcagaatg
ttaaatgcagatccatctaaagttagtatgagggccaagaaaaggggactaccacagttg
ggaactttaggagctggtaatcattatgcagaaattcaagtagtagatgagatttatgac
aagtgggctgcttgcaaaatgggtatcgaagaggttggccaagtatgtgttatgattcac
tcaggtagccgaggatttggtcaccaggtcgcaactgatgctctggttcagatggaaaaa
gcaatgaaaagagataatatcgaaactaacgacagacaattggcctgcgccagaataaac
tcagttgaaggccaagattatctgaaatcgatggccgcagccgctaattttgcctgggtc
aatcgaagttctatgacatttttaagtagacaggcatttgccaagcaattccgagttacg
ccagacgatttggacatgcatgttatctatgacgtttctcataacatagccaaagtagaa
gaacatattgtggatggcaaacaaaaaacacttttagtacatagaaagggttctacaaga
gcatttccaccacatcatccactaattccagtagattaccagctaactggccagccagtg
ttaataggtggtactatgggaacttgtagctatgttatgacaggcactgagcaaggaatg
cttgaaacatttgggtctacgtgccatggcgcgggtcgtgcattgtctcgagccaagtca
cgcagaaatattgaatataccgaggttttaaggcgactggaggacatgggaatatccatc
agggttgcttcgcccaagctggtcatggaagaagcgcccgaatcatataaaaacgtaacg
gatgtggtaaatacttgtcacgcggccggtatatccaagaaggccattaaattaagaccg
atcgcagttattaaaggctag
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