Sitophilus oryzae (rice weevil): 115880299
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Entry
115880299 CDS
T07985
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
soy
Sitophilus oryzae (rice weevil)
Pathway
soy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115880299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soy03041
]
115880299
Enzymes [BR:
soy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115880299
Spliceosome [BR:
soy03041
]
Complex C
Other components
Step II factors
115880299
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
AAA_7
T2SSE
Flavi_DEAD
AAA_30
ATPase
AAA_16
AAA_14
cobW
PhoH
ResIII
SRP54
TssR_VWA
ABC_tran
Motif
Other DBs
NCBI-GeneID:
115880299
NCBI-ProteinID:
XP_030753343
UniProt:
A0A6J2XPB0
LinkDB
All DBs
Position
Unknown
AA seq
1209 aa
AA seq
DB search
MEEDGVHRLEGTIGTEKGGLIIKKKKESTFKIPQVSLLGLDRLAAKKRKEKEDAARKMSF
SIEEEDSRDPGHDSSKETKKSGKEDRKFRTPAEETPTYTGGVSKEAKERLLEREKDRYKE
KGVYASTKDKDKGHRDSDHDRHTYKYDRNRDRKRDRDRDRDRDRYSERYGESSRRERTPK
FRDEPKTPNIKVKDGVSKTSWDDDDEPVPAKKSSWDFPTPTLYKKEDGSWSERSSKSRYG
GESSRSHRDSKSWRYDDSERVTPAHKFNAWARDRKKTGATPGINKENDEQNLKWDKTVDR
EDWEEEQKRLDREWYNMDEGYDDEHNPFSSVSEEYTKKKEEQLEQRKKKRLSAQQRQINK
DNELWERNRMLTSGVVHSVDYNEDFDEESIDRVHLLVHNIVPPFLDGRIVFTKQPEPVVP
VRDPTSDMAMVARKGSHLVKVFREQKERRKAQKKHWELGGTKLGNIMGIKKKEDEEDKKY
NKDDDSTDYKTDHKFAEHMKGSNEASSEFAKRKSISEQRRYLPAFAVRQELLNVIRENNV
VIIVGETGSGKTTQLTQYLHEEGYSKYGMIGCTQPRRVAAMSVAKRVSDEMDRALGEEVG
YAIRFEDCTSEKTVIKYMTDGILLRESLREPDLDHYSAVIMDEAHERSLSTDVLFGLLRE
IVARRHDLKLIVTSATMDSGKFSMFFGNVPTFTIPGRTFPVEVLFSKNPVEDYVDAAVKQ
ALQIHLQPPSGDILIFMPGQEDIEVTCEVLAERLGEIDNAPELSILPIYSQLPSDLQAKI
FQRSPEGIRKCVVATNIAETSLTVDGIIFVIDSGYCKLKVYNPRIGMDALQIYPISQANA
NQRSGRAGRTGPGQAFRLYTERQYKDELLITTVPEIQRTNLANTVLLLKSLGVQDLLQFH
FMDPPPQDNILNSLYQLWILGALDHTGVLTKLGRQMAEFPLDPPQCQMLIVSTQMGCTAE
ILIIVSMLSVPSIFYRPKGREEEADGVREKFQVPESDHLTFLNVYNQWKQNNYSSHWCNE
HFIHIKAMRKVREVRQQLKDIVVQQKLEIKSCGTDWDIVRKCICSAYFHQAARLKGIGEY
VNCRTGMPCHLHPTSALFGLGNTPDYVVYHELVMTAREYMQCVTSVDGHWLAELGPMFFS
LKETGKSGRAKKKQAAEHLLEMENQMQVAQEEMKARKEAADKKEAALNKGQEIISAGATP
RRTPARFGL
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagacggtgtgcacagactagaaggcacgattggaaccgaaaaggggggttta
ataatcaagaaaaagaaagagtcgacttttaaaatccctcaagtttctttactcggtttg
gatcgtttagcagcaaaaaaacgcaaagaaaaggaagatgccgctaggaagatgtctttt
tcgatagaggaagaggacagtcgcgacccaggacacgatagttcgaaagaaacaaaaaaa
agcggcaaagaagatcgtaagtttagaaccccggcagaggagacacctacatacactgga
ggtgttagtaaggaggccaaagaaagactgttagaaagggaaaaggatagatataaggag
aaaggcgtttatgcctcaactaaggataaagacaaaggtcatagagactccgaccatgat
agacacacctataaatatgataggaatcgcgatagaaaaagggatagagatagagacaga
gatcgagacaggtacagtgaacgatacggagagtcttctagaagggaaaggacgcccaaa
ttcagagatgaacccaaaacaccaaacatcaaagtaaaagatggggtatcgaaaacatcc
tgggacgacgacgatgaacccgtgcctgccaaaaaatcatcttgggatttccccactcct
accctttacaagaaggaggatggttcttggtcagaaagaagctctaaatctagatacgga
ggtgaatcttcaaggtcccatagagactcgaagagttggaggtatgatgatagtgaaaga
gtgacacctgctcataaattcaatgcatgggcgagagatagaaaaaagactggagctaca
ccaggtattaataaagaaaatgacgaacaaaatcttaaatgggataagacagtggatagg
gaagattgggaagaagaacagaaaagactagacagagaatggtacaacatggatgaaggg
tatgatgacgagcacaaccctttctcaagtgttagtgaagaatacaccaagaaaaaagag
gaacagttggaacaaagaaagaagaaaagactcagtgctcaacaaagacagattaataaa
gataatgaattgtgggagagaaacagaatgcttacatcaggcgttgtgcattctgttgat
tataatgaagattttgacgaagaatctattgacagggtacacttgctggttcataacatt
gtaccaccctttttggatggtagaattgtttttaccaaacagccagaacctgtagtacct
gtaagagatcccacttctgatatggccatggttgccagaaagggctcccacttagttaaa
gtcttcagagagcagaaagagagaagaaaggcgcagaagaaacactgggaactgggcgga
acaaagttaggaaacataatgggtataaagaagaaagaggatgaggaagacaagaagtat
aacaaagatgacgattcaactgactacaaaacagatcataaattcgctgaacatatgaaa
ggcagtaatgaggcttcaagtgagtttgccaaaagaaagtctatcagtgagcaaagaaga
tatttgcctgcttttgctgtgagacaggaattgctgaatgttattagggaaaataatgta
gttataattgttggtgaaactggcagtggtaaaacaactcaactgacccagtatcttcat
gaagaaggttacagtaaatatggaatgattggctgcactcagcctagaagagttgcagct
atgtcagtggctaaaagagtcagtgacgaaatggacagagccttgggtgaagaggtgggc
tatgccattcgttttgaagattgcacatcggaaaaaaccgtgattaaatatatgacagat
ggtatcttgctgcgagaaagtctccgagaacccgacctcgaccactacagcgccgtcatc
atggacgaggctcacgaacgttcgctcagcaccgacgtactgttcggtcttctgcgcgaa
atcgttgcgcgcaggcacgacctcaaactgatcgtcacttccgccacgatggacagcggc
aagttctccatgtttttcggaaacgtgcccacatttaccattcccggtaggactttcccc
gtggaggtgctgtttagtaagaatccagtggaggattatgtggatgctgctgtgaaacag
gcgttgcagatccacttgcagcccccttcgggagatattctgatttttatgcccgggcag
gaggacattgaggttacttgcgaggttttagcagagaggctgggcgaaatcgacaacgct
ccagaattatcgattttacccatttattcccagctaccttccgacttgcaagcgaaaatc
ttccaaagatcgccggaaggtataagaaaatgcgtggtagccaccaatatagcagaaacg
tcccttacagtggacggtattatcttcgtgatagactcgggatactgtaaactaaaagtt
tacaatcccagaattggtatggatgctctacagatctatcctatatcgcaagccaacgct
aaccaaagatcaggtcgtgcgggccgtacaggccctggtcaagccttccgcctgtacacc
gaaagacaatacaaggacgaactgctaataaccaccgtaccggaaatacagagaactaac
ctggccaatacggtactcttgctcaaatcgctaggcgttcaagatttattacagttccat
ttcatggatccgccacctcaagacaatattttgaattcgctgtatcaattgtggattttg
ggagctttggatcatacaggtgtcctaaccaagttgggacgacagatggccgagttcccg
ttggaccctccccaatgccaaatgctgatagtgtccacgcaaatggggtgtaccgcggaa
attttgattatcgtttccatgttgtccgtcccctccatattctaccggccaaaaggtcgc
gaagaagaagcagatggagttagagaaaaatttcaagtacctgaaagcgatcatttgacg
tttctcaacgtctacaaccaatggaaacagaacaactattcctcgcactggtgcaacgag
catttcattcacataaaggctatgcgcaaagtcagagaggtcagacaacaactgaaggat
attgtcgtccaacaaaaactggaaataaaatcctgcggtacggactgggacattgtcagg
aaatgtatctgttccgcttatttccatcaagcagctcgtctgaaaggtattggcgaatac
gtaaactgccgtacaggaatgccgtgtcacttacatcccacatcagccctattcggtcta
ggaaacactccagattacgtagtttaccatgaacttgtaatgacagctcgtgaatacatg
cagtgtgttacttcagtcgatggacactggctcgccgagttgggtccaatgtttttctct
ctaaaagaaacaggaaaatcgggtcgggctaagaaaaaacaagccgcggaacatttgctc
gagatggagaatcagatgcaagtggctcaggaagagatgaaagctagaaaagaggctgcg
gacaaaaaggaagctgctctgaataaaggtcaagagattatcagcgctggggcaactcct
agaagaactccggcaagatttgggctgtaa
DBGET
integrated database retrieval system
