Sitophilus oryzae (rice weevil): 115881024
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Entry
115881024 CDS
T07985
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
soy
Sitophilus oryzae (rice weevil)
Pathway
soy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115881024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soy03041
]
115881024
Enzymes [BR:
soy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115881024
Spliceosome [BR:
soy03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
115881024
Complex B
115881024
Complex C
U2 SnRNP specific factors
115881024
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
TAF1D
Motif
Other DBs
NCBI-GeneID:
115881024
NCBI-ProteinID:
XP_030754237
UniProt:
A0A6J2XS06
LinkDB
All DBs
Position
Unknown
AA seq
752 aa
AA seq
DB search
MSGFNYSSFNKSNKMNAVPPPSSLTAPSVPKRLNAVPPPSSMGTGIRHSAIPPPTTGLSK
QGYSTMTAISQNALTASWGTGSRKRAVTEDEYFDQDDEEQVPELAYIPAPDSPTRLEMNR
KRSGDDDNDDDDDPLDAFMAGIEAQVQKESQNVGSSAQSQQQAVRNDLEEEDIEESYYRY
MEENPNAGVLPVEEDGIEIEYDEDGNPIPPDKKRIIDPLPPIDHSEIEYQPFQKNFYIEH
PEIKLLSKNKASELLKTYDLHVSGNDIPKPVASFAHFGFDSKLLKAIVKAEYSSPTPIQA
QAVPCAMMGRDVLGIAQTGSGKTAAFLWPLLKHVSVQKPVEEGEGPIALILAPTRELALQ
IYNEAKKFAKVYDLRVICAYGGGSKWEQTLALQEGAEIVVATPGRIIDHVKGGATNLQRV
TFLVLDEADRMFELGFEPQVRSVCNHVRPDRQTLLFSATFRYKIERLAKDALHDPIKISQ
GTTGQANEDITQHALLLPTQEAKRDWLFGKLVELLSAGSVLIFVTKKLDAEKVAKDLLVK
EYDCLLLHGDMEQAERNKVITAFKKQEVPLMVATDVAARGLDIPHIRTVINYDIARDIDT
HTHRVGRTGRAGMQGTAYTLLTFKDKEFAGHIVKNLEAAHQQVPQEVMDLALQSSWFRSQ
KLKSKKENPNVGGIGLGFKAKPSAMRGFVASSSGNLSTSPAAPPPSTKGPATNRLTAMKE
AFKAQYMNQFTASSESPPPPPPSQRKKKSRWE
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtttcaattattccagtttcaacaaatctaacaaaatgaatgctgtacctcct
cctagcagtttaacagctccttctgtgcctaagagactgaatgctgtacctcctcctagt
tctatgggaacgggaataaggcacagtgccattccaccccctacgactggtcttagcaaa
cagggatattcgactatgactgctatcagccagaacgctcttacagcgtcttggggcaca
ggatccaggaaacgagcggttacagaagacgaatattttgatcaagatgacgaggaacaa
gtaccagagcttgcatatattcccgcacctgatagtcctactaggttagaaatgaataga
aaaaggtccggggatgatgataatgatgacgatgacgatccacttgatgcttttatggcg
gggattgaagctcaagttcaaaaagagagtcagaatgttggttcatctgcacagtcccaa
caacaagctgttagaaatgatttagaggaagaagatattgaagaatcttattacaggtac
atggaggaaaatccaaatgctggtgtgttacctgtggaagaggatggcatagaaatagag
tatgatgaagatggaaatccaatcccacctgataagaaaagaattattgatccacttcca
ccaatcgatcattcagagattgaatatcaaccttttcagaagaatttctatattgagcat
ccagaaataaagttgctcagcaagaataaggcttctgagttgcttaaaacttatgacctt
cacgtctcgggaaacgatataccaaagcctgtcgcttcttttgcccattttggctttgac
agcaaacttctaaaggctattgttaaagcagagtattcatcacctacacccattcaagcc
caggcagtaccgtgtgccatgatgggtagagatgtactgggcattgctcaaaccggtagt
ggtaagactgcagctttcttgtggcctctcttgaagcatgtttcagttcaaaagcctgtg
gaggaaggggaggggcccatagctcttattttagctccgacaagggagttagcgttgcaa
atttacaatgaggctaaaaagtttgctaaagtttatgatttgagggtgatatgtgcctat
ggtggtggatcaaagtgggagcaaacattggctctgcaagaaggcgcggaaatagtcgtg
gcaacaccgggtcgtataatcgaccacgtcaaaggcggcgccacaaacttacagcgggtg
acgtttctggtattagatgaagccgacagaatgtttgagttgggttttgagcctcaagtt
agatcggtttgcaatcacgttaggcctgatagacagactttgctgttttctgcaacattt
agatacaaaattgaaaggttggccaaagatgcgcttcacgatccaataaaaatttctcaa
ggaactactggtcaagccaatgaagatatcacccaacatgccttgcttttacccactcag
gaagccaaaagagattggttgtttggaaaactagttgaattgttatcagctggttcagtg
ttgatattcgtcacgaaaaaactagatgctgaaaaagtggccaaagacttgttagttaaa
gagtatgactgtttgctgttgcatggggatatggagcaagctgaaagaaataaagttatt
acagctttcaagaagcaagaagtacctttaatggttgctactgatgtggctgctaggggt
ttggatattcctcatatcaggacagttattaactatgacatagctagggatattgatacg
catacccatagggttggtaggactggacgtgctggtatgcagggtacggcttacacgtta
ttaaccttcaaagacaaggaatttgccgggcacatagtaaagaatctcgaagcggcccat
caacaagtaccgcaagaggttatggatctagcgttacaaagttcatggttcagaagtcaa
aagttgaagagcaaaaaagaaaatcccaacgtgggcggcatagggctgggtttcaaggcg
aaaccgtcggcgatgcgaggcttcgttgccagctcctcgggaaatctgtcaacgtcgccc
gcggctccgcccccttctacgaagggacccgccaccaacagactgaccgccatgaaagag
gccttcaaagctcaatatatgaatcagttcactgctagttctgaaagtcccccaccgcca
ccgcctagccaaagaaaaaaaaagagccgatgggaatga
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