Sitophilus oryzae (rice weevil): 115881498
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Entry
115881498 CDS
T07985
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
soy
Sitophilus oryzae (rice weevil)
Pathway
soy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115881498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soy03019
]
115881498
Messenger RNA biogenesis [BR:
soy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115881498
mRNA degradation factors
5'-3' decay
Decapping complex
115881498
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
115881498
NCBI-ProteinID:
XP_030754859
UniProt:
A0A6J2XW67
LinkDB
All DBs
Position
Unknown
AA seq
768 aa
AA seq
DB search
MANSFFDFDASLKGGLGLRKGASILPDDDDDDCYDNEEEYDALNDETFGACDPSDDWEQQ
HEQFAEFQESSKHSEHIENSISQLVLNDSSSDDEKSIEPLSFPSNSSVWAYTPTHKNGDI
FNSTSVLSSLQKASKSFIESHTDNAPLLNVNNALPGKICTVEELEKNLLKNSQTANVYRQ
SPQHVQQAQFQQPRPMLPMPQHPPPYHPMLQHPNARLPPPMNMPPPGMRHLPPHPLMGTA
LRMIPPHLPPHPHMMPPNGTPRPPGFLYPLPVNHRFGFPPPPYNPGPVGPNQSKGVPPRG
PYPNNMQVMQPPPQQQPPQQQFSPQRQQQHRVRQDSGNFRGNFREQEGYNRDEYAGLMTA
KDKQWLLNIQLLQLNTGTPYFDDYYYTIYKERQSRSNKENNQHYNERERNGRFQNNSGRQ
RRNSDRQENTLTPRVYTPLQFENSLGKLQCGSVTAPRKIIDMDIVTPEKDQDLPQPTKDS
RKTKQLLLELEALYSLLLKAEDIKNPMFISNMEKWREMKQKQRLRELEQAPTPEQKQEVL
RLFKLESEPVEEHQYDYIVKIVNGWLQDEKFASFLNIRKGKILLLRLLPHLNCDAFSTHL
VEIWSKVLLSLPIIGRRDTAGDNILPRFYPYFKRYVQNCTFSDVLDIVAGLVEVVKQENS
RSTPLSHVGKAPLYFVILNKFGVSALVVLFMRCEYLFSTDTVTERQQADWSAFLASWAKH
TDTVSKVAVPIEVIPSQVFAKHVNRFSDLTLDKKSLLKKYFVDIPVAD
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattcgttttttgattttgacgcttcgttaaaaggaggcttaggcttgaggaag
ggcgcaagtattctaccagacgacgacgacgatgattgctatgataatgaagaagaatat
gatgcattaaatgatgagactttcggtgcatgtgatccttccgatgattgggagcaacag
catgaacagtttgctgaattccaagagagttccaagcattctgaacacattgaaaactca
atatcgcagttagttttgaacgattcatcatctgatgatgagaagagtattgaaccttta
tcttttccatcaaactcttcggtttgggcgtacacacccacccataaaaatggtgatata
ttcaactctacttctgtactttcatcgctgcagaaagcttccaagtcatttattgagtca
cacaccgacaatgcgcctcttttaaatgtaaataatgctctccctgggaaaatatgtact
gtcgaggagttagaaaaaaacttattaaaaaattcacaaacagcaaatgtttatcgtcaa
tctcctcaacatgttcaacaagcacaatttcagcaaccaagacccatgttaccaatgcca
caacatcctcctccataccatccaatgctacagcatcccaatgccagattaccacctccg
atgaatatgccaccaccaggtatgaggcatctaccgccacatcctcttatgggtactgca
ctgagaatgatacctccacatcttcctcctcatccgcacatgatgcctccaaacggtact
cccagacctccaggatttttatatcctttaccggttaaccatcgttttggttttccacct
ccaccttataacccggggcctgtagggccgaaccaaagtaaaggcgtacctcccagggga
ccatatcctaacaacatgcaagttatgcaaccacctccgcaacaacaaccaccacaacaa
cagttctcaccccagcgtcagcaacagcatcgtgtaagacaagacagtggaaatttcaga
gggaactttagagaacaagaaggttacaacagagatgaatacgctggtcttatgacggca
aaagataaacaatggttgttaaatattcagttgctgcaactgaatactggaacaccatat
tttgatgattattattataccatatataaagagagacaatctagaagcaacaaagagaat
aatcagcattataacgagagggagcgaaatggaagattccaaaataatagtggaagacag
agaaggaatagtgacagacaagaaaatactttgacccctagagtttatacacctttgcag
tttgaaaattcattagggaaactacagtgtggttcagtaacagctccgagaaaaattata
gacatggacattgtaactccggagaaagaccaagatcttcctcaacctaccaaagattcg
aggaaaaccaagcaattgcttcttgaattggaagcgctgtattcgcttcttttgaaagct
gaagatattaaaaatccaatgtttatcagtaacatggaaaaatggagggagatgaaacaa
aaacaaaggctgagagaattggaacaagctcccactccagaacaaaaacaagaagtacta
cgtctattcaagctggagagtgaaccagttgaagaacaccagtacgactatattgttaaa
atcgtcaatggatggcttcaagacgaaaagttcgccagttttctcaacatccgaaaagga
aagatactcctattacgactattacctcacttgaattgtgacgcattttctacgcacctg
gtagaaatatggagtaaagtccttcttagtttaccgataattggacgtagggatactgca
ggtgacaatattttaccaagattctatccatattttaaaagatatgtacagaattgtaca
ttctcagatgtactagatattgttgccgggttagttgaagtggtaaaacaggagaatagc
agaagtactcctttaagtcatgttgggaaagctccattatatttcgtaattcttaacaag
tttggggtttcggccctagtggtgctgttcatgcgttgcgaatacttgttttcgactgac
accgtcacggagaggcaacaagccgattggtcggctttcctggcgtcatgggccaaacac
acggacaccgtgagcaaagtggcggtacctatagaggttataccctcgcaggtattcgcc
aagcacgtcaacagattctccgatttgacactggacaaaaaatcgctcctgaaaaaatac
ttcgtagatatacccgttgcggattaa
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