Sitophilus oryzae (rice weevil): 115884543
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Entry
115884543 CDS
T07985
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
soy
Sitophilus oryzae (rice weevil)
Pathway
soy03013
Nucleocytoplasmic transport
soy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115884543
03015 mRNA surveillance pathway
115884543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soy03019
]
115884543
Enzymes [BR:
soy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115884543
5.6.2.5 RNA 5'-3' helicase
115884543
Messenger RNA biogenesis [BR:
soy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115884543
mRNA cycle factors
Common to processing body (P body) and stress granule
115884543
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
DEAD
UvrD-helicase
Helicase_RecD
NPHP3_N
AAA_16
nSTAND3
AAA_22
SRP54
AAA_7
AAA_5
Motif
Other DBs
NCBI-GeneID:
115884543
NCBI-ProteinID:
XP_030759016
UniProt:
A0A6J2Y725
LinkDB
All DBs
Position
Unknown
AA seq
1107 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSECDFTDFTIPSQTQASQHDHTGPKVHGVQ
INNNLSTKIASVTTALGELQFEEEDEEFYNSKELPDFACKYCGIHEPNCVVMCNLCKKWF
CNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETILECYSCGVRNVFVLGFIPAKADSV
VVLLCRQPCAAQNSLKDMNWDQDQWKPLIADRCFLTWLVKIPSEQEQLRARQITAQQINK
LEELWKENVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKESQ
TQENIEVRWDVGLNKKTIAYFTLAKTDGDMKLMHGDELKLRYVGEMHKSWAGIGHVIKVP
DNYGEDIGIELKNGSGAPTDCTSNFVVDFIWKSTSFDRMQVALRKFAVDDASVSQYIYHR
LLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSAT
IVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKTDLKVVRLCAKSREAIDSPVSFLALHNQ
IRKMEGNTELQKLQQLKDETGELSSMDEKRYRMLKKLAEKELLEAADVICCTCVGAGDPR
LVRLKFHSILIDESMQATEPECMVPVVLGVKQLILVGDHCQLGPVVMCKKAARAGLSQSL
FERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVSAEERKLIKIDFPWPIADR
PMFFLVTQGQEEIAGSGTSYLNRTEAANVEKIATRFLRAGVKPEQIGVITPYEGQRAYLV
QHMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALT
RAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLTNMKESLIQFAKPKKLTNSEN
PGGHFMSTSMFDAREAMVPGSVYDRTGSTMNGSGPFGNLGTNFQPSRPVQMDMFGRTHDP
IGYIAPERAQAGFNLPVPVGMFMNMAHIPPRFYNQHQQAVQARQQQQNPRGQNRRVPQRQ
KGKNLSQDQTQPFSQSLQLTQGGMSQPGLSQPGFSLSQPGLSQAELSQDLYMAEYQSQMD
GLLSQDSTYQGDRSAFYQPSAQFSQPY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagatgcgtatggcccgagttctcaaactctcacgtttctcgatacagaagag
gcagatcttattggggcagatacccagggctccgaatgtgatttcacagattttactatc
ccttcgcaaactcaagcatcacagcatgatcacacgggacccaaagttcatggcgtacag
ataaacaacaacttgtcaactaaaatagcatctgtgactactgctttgggagaactacaa
tttgaagaagaagatgaagagttttataatagtaaagaattaccagattttgcctgcaag
tattgtggcatccacgagccaaattgtgtggtaatgtgtaacttgtgtaaaaagtggttt
tgcaatggaaggggaaacacttctgggagccacattataaatcatttggttagagccaaa
cataaggaagttacactccacaaggatggacctcttggtgaaactattttagaatgctac
agttgtggtgtaagaaatgtctttgtattgggtttcatcccagctaaagctgattctgtg
gttgtactgctttgcagacagccttgtgctgctcaaaattccttgaaggatatgaattgg
gatcaagaccaatggaaacccttaattgcagatcgttgtttccttacctggttagttaaa
attccatctgaacaagaacaacttagagcgagacagattactgctcagcaaataaataaa
ctagaagaattatggaaagagaatgttgatgcaacttttcaagatttagaaaagcccgga
gttgatgaagagccacaacaggttctgttgcgttatgaagatggctatcagtatcaaaat
atatttggccctttggttaagctggaagctgactacgataagagacttaaagagtctcaa
actcaagaaaatattgaggtcagatgggatgttggactaaataagaagactattgcctac
tttacattagcaaaaactgatggagacatgaaattgatgcatggggatgaattaaaattg
cgttatgttggagaaatgcataaatcctgggctggaattggtcatgttattaaagttcct
gataattatggtgaagatattggtatagagttaaagaatggttcaggagctcctactgac
tgtactagtaattttgttgttgattttatttggaagagtacaagttttgacaggatgcaa
gtagcattaagaaaatttgcagttgatgatgcttctgtttctcagtacatttatcacaga
ctgctcggtcacgaagtggaagaagttctatttcgttgccatcttccaaaacacttttcc
gctccaaatttgccagatttgaacagatcgcaagtatatgctgttaaacatgctttacaa
agacctctttcattgattcaagggccaccaggaactgggaaaactgtaacatcggctact
attgtgtatcagttagtgaagcaaaatggcggaccagtgttggtatgcgctcctagcaac
acagctgtagatcagctaactgagaaaattcacaaaacggatttaaaagtggtgagactt
tgtgctaaatctcgtgaagctattgattctccagttagtttcctggctttgcataatcaa
ataagaaaaatggaaggtaacactgagttacaaaagttgcagcaacttaaggatgaaacc
ggggaattatctagcatggatgagaaaagatataggatgttgaaaaaattggcagaaaag
gaacttttggaagcagctgatgttatttgctgcacatgtgttggtgcaggtgatccacgt
cttgttagattgaaattccactcaattttgattgatgaaagcatgcaggcaacagaaccg
gaatgtatggtgccagttgtgttgggtgtgaaacaactcattttagtaggtgatcattgt
caattgggtccagttgttatgtgcaaaaaagcagctagggctggtctgtctcaatcttta
ttcgagagactagttgtgttgggtattagaccttttagattggaggtacagtacagaatg
catccagaactgtcgcgttttccatccaatttcttttatgaaggaagcttgcaaaatgga
gttagtgctgaagaaagaaaattaatcaagattgactttccttggcccattgctgataga
cccatgtttttcttagttacacaaggtcaagaagaaattgctggtagtggaaccagttac
ttgaacaggacagaagccgccaacgtcgaaaaaattgctaccagatttttaagagcagga
gtcaaaccggaacaaataggtgttataactccatatgaagggcagagagcgtatttggtt
caacatatgcaataccaaggttccttgcatagtaaactatatcaggaaattgaaattgcc
agtgtggatgcttttcaaggaagagaaaaggatattattattatgtcatgtgttaggagc
aatgaacatcaaggcattggatttttaaatgatcctagaagattgaatgtggctttgacc
agagcaaaatatggaattataatagtgggcaatccaaaagttctgtctaagcaaccttta
tggaaccatcttttatcattttataaggaacagaaggttttggttgagggacctttaacc
aatatgaaagagtccctaatacagtttgctaaaccaaagaaactaaccaattctgaaaat
ccaggaggtcattttatgtctacatcaatgtttgatgcaagggaggcaatggtccctggt
tcagtgtatgacagaaccggttcaacaatgaatggatcaggaccattcggcaatttaggt
accaactttcaaccgagtaggcctgttcaaatggatatgtttggacgtactcacgaccct
atcgggtacattgcaccagaaagagctcaggctggttttaatcttcctgtgccggttggt
atgtttatgaatatggcccatatacctcccagattttataatcagcatcaacaagctgta
caagctaggcaacaacaacaaaatcctaggggacaaaatagaagagttccacagagacag
aaaggcaaaaatcttagtcaggatcagacacaacctttcagccagagtctccaacttact
caaggcggaatgtcccaacctggactgtcccagcctggatttagtttatctcaacctggt
ctatctcaagcggaactgagtcaggatctgtacatggccgaatatcaaagccagatggac
gggctgttgtcacaggattcaacttatcagggagataggtctgctttttaccaacctagc
gcccaattctcccagccatattga
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integrated database retrieval system
