Streptococcus pyogenes NZ131 (serotype M49): Spy49_0006
Help
Entry
Spy49_0006 CDS
T00780
Symbol
trcF
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
soz
Streptococcus pyogenes NZ131 (serotype M49)
Pathway
soz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
soz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Spy49_0006 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soz03400
]
Spy49_0006 (trcF)
Enzymes [BR:
soz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spy49_0006 (trcF)
DNA repair and recombination proteins [BR:
soz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Spy49_0006 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
AAA_22
RecG_dom3_C
adh_short
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ACI60370
UniProt:
A0A0H3BVA9
LinkDB
All DBs
Position
5321..8740
Genome browser
AA seq
1139 aa
AA seq
DB search
MGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELVFQFFADDVAAA
EFIFASMDKALSRIETLQFLRNPKSQGVLIVSLSGLRTLLPNPDVFTKSQIQLTVGENYD
SDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEITQELPYRLEFFGDDIDSIRQFHP
ETQKSFEQLEGIFINPASDLIFEASDFQRGIEQLEKALQTAQDDKKSYLEDVLAVSKNGF
KHKDIRKFQSLFYEKEWSLLDYIPKGTPIFFDDFQKLVDKNARFDLEIANLLTEDLQQGK
ALSNLNYFTDNYRELRHYKPATFFSNFHKGLGNIKFDQMHQLTQYAMQEFFNQFPLLIDE
IKRYQKNQTTVIVQVESQYAYERLEKSFQDYQFRLPLVSANQIVSRESQIVIGAISSGFY
FADEKLALITEREIYHKKIKRRARRSNISNAERLKDYNELAVGDYVVHNVHGIGRFLGIE
TIQIQGIHRDYVTIQYQNSDRISLPIDQIGSLSKYVSADGKEPKINKLNDGRFQKTKQKV
ARQVEDIADDLLKLYAERSQQKGFSFSPDDDLQRAFDDDFAFVETEDQLRSIKEIKADME
SMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYP
VEVDVLSRFRSKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVK
HKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGL
VREAIIREMDRGGQIFYVYNKVDTIEKKVAELQELVPEASIGFVHGQMSEIQLENTLIDF
INGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYR
PDKILTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSVGFEMYSQ
LLEQAIASKQGKTTVRQKGNTEINLQIDAYLPDDYIADERQKIDIYKRIREIQSREDYLN
LQDELMDRFGEYPDQVAYLLEIALLKHYMDNAFAELVERKNNQVIVRFEVTSLTYFLTQD
YFEALSKTHLKAKISEHQGKIDIVFDVRHQKDYRILEELMLFGEMLSEIKIRKNNSVFK
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggggttatcgggttcaagtaaagcattggctatagcttccgcttatttagatgatcaa
aaaaaaatagttgtggttacatcaactcaaaatgaggttgaaaaattagccagcgattta
tctagtttacttgatgaagaacttgttttccaattttttgcagacgatgtggctgcagcg
gaatttatctttgcgtcaatggataaagctctatcaagaatagaaaccctgcaattttta
aggaatcctaaatctcagggcgttttaattgttagtttatcaggcttaagaactttattg
ccaaacccagatgtttttacaaagagtcagattcaactaacagttggagaaaattatgat
agtgatactcttactaaacaactgatgacaattggatatcagaaggtctcacaggttatt
agtccgggagaatttagccgtcgaggggatattttagatatctatgagattacacaagaa
ttgccttatcgattggaattttttggtgatgatattgatagtattaggcaatttcatcca
gaaactcaaaaatcttttgaacaactagaaggtatttttattaatccagcaagtgatctt
atttttgaggctagtgattttcaacgtggcattgagcaattagaaaaggctctacaaaca
gcacaagatgataaaaaatcttatttagaagatgtattagctgtttcaaaaaacggtttt
aaacataaggatatccgtaaatttcaatcattattttatgaaaaagagtggtcattatta
gattatattcctaagggaacgccaatcttttttgatgattttcaaaaactagttgataaa
aatgcaagatttgatttagagattgctaatctcttgacagaagatttacagcaaggaaag
gctctttccaatcttaactactttacagataattatcgagagcttaggcactataagcca
gcgaccttcttttcaaattttcataagggacttggaaatatcaaatttgatcagatgcat
cagctaactcagtatgccatgcaggaattttttaatcaatttcctttgttgattgatgag
attaaacggtatcaaaaaaatcaaacaacggttattgtacaggtagagtctcagtatgct
tacgaacgacttgaaaaatcttttcaagattaccaatttcgccttcctttagtgagtgct
aatcaaattgtttcacgtgaatcacaaattgtaattggagctatctccagtggtttttat
tttgctgatgaaaagttagcgttaatcacagagcgtgaaatttatcataaaaagatcaaa
cgacgcgctagacgatctaatattagcaatgctgagcgtttgaaagattacaatgagtta
gcagtaggtgattacgtggttcataatgtccatggtatcggtcgctttcttggaattgaa
acgattcagattcagggaatccatcgagattatgttactattcaatatcaaaattcagac
cgtatttctcttccaattgaccaaattggtagcttatcaaagtacgtttctgctgatgga
aaagaacctaaaattaataaactcaatgatggtcgttttcaaaagacaaagcaaaaggtc
gctagacaagtagaggatattgctgatgaccttctaaaattatatgctgaaagaagtcag
caaaaaggattttcattttcaccagatgatgacttgcagcgcgcttttgatgatgatttt
gcttttgtagaaacagaagatcaacttaggtctataaaggaaattaaagctgatatggag
agcatgcagcctatggatcgtcttttagtaggcgatgtaggatttggtaagacagaagta
gctatgagggcagcctttaaagcggtgaatgatcacaaacaagtagctgtcttagttcca
accacagtcttggcccagcagcattatgaaaacttcaaagcacgctttgaaaattaccct
gttgaggttgacgtcttaagtcgtttccgtagtaaaaaagagcaagctgaaacactagaa
cgtgtacgaaaaggtcaaattgacattattatcggaacccatcgactcctatcaaaagat
gtggtcttttctgatttaggattgattgtgattgatgaggaacaacggtttggtgttaag
cataaagaaactttaaaggaattaaaaactaaggttgacgtcttaaccttaacagctact
ccgattcctagaaccttacacatgtctatgttaggtatccgagatttatcggttattgag
accccaccaaccaatcgttatcctgttcaaacctatgttttggaaaataatccaggtctc
gttagagaagctatcattcgtgaaatggatcgtggaggacaaattttttacgtttacaat
aaagttgacactattgaaaagaaagttgcagagctacaagaattagtcccagaagcttct
ataggttttgttcatgggcaaatgagtgaaattcaacttgaaaataccttgattgacttt
ataaatggtgattatgatgtccttgtggctacaacgatcatcgaaacaggagttgacatt
tctaatgtaaacactttgtttattgagaatgctgatcatatgggattgtcaactttatat
caactacgaggtcgtgtaggaagaagtaatcgtattgcctatgcttacctgatgtatcgt
cctgataagatcctaacagaagtctctgaaaaacgtttagaggctattaaaggctttact
gaattaggttcaggcttcaagattgctatgcgagatttgtctatacgaggagcaggtaat
attttaggagcttctcaaagtggctttattgattcggtcggttttgaaatgtattctcag
ttattggaacaggctattgctagcaagcaaggaaaaacgactgttcgccaaaaagggaat
actgaaatcaatcttcagattgatgcctatttaccagatgattatattgcagatgagcgc
caaaaaattgacatttacaagcgtattcgagaaattcaatcaagagaagattatctcaat
ttgcaagatgagcttatggatcgttttggagagtatcctgatcaagttgcctatttgtta
gagatagctctgctaaaacattatatggacaatgcctttgcggaattagttgaacgcaaa
aataatcaggtcattgttcgatttgaagtaacttctttaacttatttcttgactcaggat
tatttcgaagccttatcgaaaacccatcttaaagctaaaattagtgaacatcaggggaaa
atcgatatcgtctttgacgttcgccatcaaaaagattatagaattttagaagaattgatg
ttatttggagaaatgcttagtgagataaaaatcagaaaaaacaattcagtttttaaataa
DBGET
integrated database retrieval system
