Streptococcus pyogenes MGAS10394 (serotype M6): M6_Spy0006
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Entry
M6_Spy0006 CDS
T00191
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spa
Streptococcus pyogenes MGAS10394 (serotype M6)
Pathway
spa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M6_Spy0006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spa03400
]
M6_Spy0006
Enzymes [BR:
spa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M6_Spy0006
DNA repair and recombination proteins [BR:
spa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M6_Spy0006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
AAA_22
RecG_dom3_C
adh_short
AAA_16
DmsC
Motif
Other DBs
NCBI-ProteinID:
AAT86141
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All DBs
Position
5207..8710
Genome browser
AA seq
1167 aa
AA seq
DB search
MDILELFSQNKKVQSWHSGLTTLGRQLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNE
VEKLASDLSSLLDEELVFQFFADDVAAAEFIFASMDKALSRIETLQFLRNPKSQGVLIVS
LSSLRTLLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDIL
DIYEITQELPYRLEFFGDDIDSIRQFYPETQKSFEQLEGIFINPASDLIFEASDFQRGIE
QLEKALQTAQDDKKSYLEDVLAVSKNGFKHKDIRKFQSLFYEKEWSLLDYIPKGTPIFFD
DFQKLVDKNARFDLEIANLLTEDLQQGKALSNLNYFADNYRELRHYKPATFFSNFHKGLG
NIKFDQMHQLTQYAMQEFFNQFPLLIDEIKRYQKNQTTVIVQVESQYAYERLEKSFQDYQ
FRLPLVSANQIVSRESQIVIGAISSGFYFADEKLALITEHEIYHKKIKRRARRSNISNAE
RLKDYNELAVGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSDRISLPIDQIGSL
SKYVSADGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFSFSPDDDL
QRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDH
KQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVQKGQIDIIIG
THRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGGQIFYVYNKVDTIEKKVAEL
QELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRD
LSIRGAGNILGASQSGFIDSVGFEMYSQLLEQAIASKQGKTTVRQKGNTEINLQIDAYLP
DDYIADERQKIDIYKRIREIQSREDYLNLQDELIDRFGEYPDQVAYLLEIALLKHYMDNA
FAELVERKNNQVIVRFEVTSLTYFLTQDYFEALSKTHLKAKISEHQGKIDIVFDVRHQKD
YRILEELMLFGERLSEIKIRKNNSVFK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggatattttagaattatttagtcagaataagaaagtccaatcctggcactctggatta
accaccttaggaagacaactggtaatggggttatcgggttcaagtaaagcattggctata
gcttccgcttatttagatgatcaaaaaaaaatagttgtggttacatcaactcaaaatgag
gttgaaaaattagccagcgatttatctagtttacttgatgaagaacttgttttccaattt
tttgcagacgatgtggctgcagcggaatttatctttgcgtcaatggataaagctctatca
agaatagaaaccctgcaatttttaaggaatcctaaatctcagggcgttttaattgttagt
ttatcaagcttaagaactttattgccaaacccagatgtttttacaaagagtcagattcaa
ctaacagttggagaagattatgatagtgatactcttactaaacaactgatgacaattggc
tatcagaaggtctcacaggtcattagtccgggagaatttagccgtcgaggggatatttta
gatatctatgagattacacaagaattgccttatcgattggaattttttggcgatgatatt
gatagtattaggcaattttatccagaaactcaaaaatcttttgaacaactagaaggtatt
tttattaatccagcaagtgatcttatttttgaggctagtgattttcaacgtggcattgag
caattagaaaaggctctacaaacagcacaagatgataaaaaatcttatttagaagatgta
ttagctgtttcaaaaaacggttttaaacataaggatatccgtaaatttcaatcattattt
tacgaaaaagagtggtcattattagattatattcctaagggaacgccaatcttttttgat
gattttcaaaaactagttgataaaaatgcaagatttgatttagagattgctaatctcttg
acagaagatttacagcaaggaaaggctctttccaatcttaactactttgcagataattat
cgagagcttaggcactataagccagcgaccttcttttcaaattttcataagggacttgga
aatatcaaatttgatcagatgcatcagctaactcagtatgccatgcaggaattttttaat
caatttcctttgttgattgatgagattaaacggtatcaaaaaaatcaaacaacggttatt
gtacaggtagagtctcagtatgcttacgaacgacttgaaaaatcttttcaagattaccaa
tttcgccttcctttagtgagtgctaatcaaattgtttcacgtgaatcacaaattgtaatt
ggagctatctccagtggtttttattttgctgatgaaaagttagcgttaatcacagagcat
gaaatttatcataaaaagatcaaacgacgcgctagacgatctaatattagcaatgctgag
cgtttgaaagattacaatgagttagcagtaggtgattacgtggttcataatgtccatggt
atcggtcgctttcttggaattgaaacgattcagattcagggaatccatcgagattacgtt
actattcaatatcaaaattcagaccgtatttctcttccaattgaccaaattggtagctta
tcaaagtacgtttctgctgatggaaaagaacctaaaattaataaactcaatgatggtcgt
tttcaaaagacaaagcaaaaggtcgctagacaagtagaagatattgctgatgaccttcta
aaattatatgctgaaagaagtcagcaaaaaggattttcattttcaccagatgatgacttg
cagcgcgcttttgatgatgattttgcttttgtagaaacagaagatcaacttaggtctata
aaggaaattaaagctgatatggagagcatgcaacctatggatcgtcttttagtaggcgat
gtaggatttggtaagacagaagtagctatgagggcagcctttaaagcggtgaatgatcac
aaacaagtagctgtcttagttccaaccacagtcttggcccagcagcattatgaaaacttc
aaagcacgctttgaaaattaccctgttgaggttgacgtcttaagtcgtttccgtagtaaa
aaagagcaagctgaaacactagaacgtgtacaaaaaggtcaaattgacattattatcgga
acccatcgactcctatcaaaagatgtggtcttttctgatttaggattaattgtgattgat
gaggaacaacggtttggtgttaagcataaagaaactttaaaggaattaaaaactaaggtt
gacgtcttaaccttaacagctactccgattcctagaaccttacacatgtctatgttaggt
atccgagatttatcggttattgagaccccaccaaccaatcgttatcctgttcaaacctat
gttttggaaaataatccaggtctcgttagagaagctatcattcgtgaaatggatcgtgga
ggacaaattttttacgtttacaataaagttgacactattgaaaagaaagttgcagagcta
caagaattagtcccagaagcttctatcggttttgttcatgggcaaatgagtgaaattcaa
cttgaaaataccttgattgactttataaatggtgattatgatgtccttgtggctacaaca
atcatcgaaacaggagttgacatttctaatgtaaacactttgtttattgagaatgctgat
catatgggattgtcaactttatatcaactgagggggcgcgtcggaagaagtaatcgtatt
gcctatgcttacctgatgtatcgtcctgataagatcctaacagaagtctctgaaaaacgt
ttagaggctattaaaggctttactgaattaggttcaggcttcaagattgctatgcgagat
ttgtctatacgaggagcaggtaatattttaggagcttctcaaagtggctttattgattcg
gtcggttttgaaatgtattctcagttattggaacaggctattgctagcaagcaaggaaaa
acgactgttcgccaaaaaggtaatactgaaatcaatcttcagattgatgcttatttacca
gatgattatattgcagatgagcgccaaaaaattgacatttacaagcgtattcgagaaatt
caatcaagagaagattatctcaatttgcaagatgagctgatagatcgttttggagagtat
cctgatcaagttgcctatttgttagagatagctctgctaaaacattatatggacaatgcc
tttgcggaattagttgaacgcaaaaataatcaggtcattgttcgatttgaagtaacttct
ttaacttatttcttgactcaggattatttcgaagccttatcgaaaacccatcttaaagct
aaaattagtgaacatcaggggaaaatcgatatcgtctttgacgttcgccatcaaaaagat
tatagaattttagaagaattgatgttatttggagaaaggcttagtgagataaaaatcaga
aaaaacaattcagtttttaaataa
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